barry_mercer.h

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/*
 * Copyright (c) 2019-2020:  G-CSC, Goethe University Frankfurt
 * Author: Arne Naegel
 *
 * This file is part of UG4.
 *
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 *
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 *
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 *
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef POROELASTICITY_BARRY_MERCER_H_
#define POROELASTICITY_BARRY_MERCER_H_
 
#include "lib_disc/io/vtkoutput.h" // VTKOutput
#include "lib_disc/function_spaces/interpolate.h" // Interpolate
 
#include "lib_disc/spatial_disc/elem_disc/dirac_source/lagrange_dirac_source.h"
#include "lib_disc/spatial_disc/constraints/dirichlet_boundary/lagrange_dirichlet_boundary.h"
 
#include "barry_mercer_data.h"
#include "biot_tools.h"
 
namespace ug {
namespace Poroelasticity{
 
 
 
template <class TGridFunction>
class BarryMercerErrorData {
 
  enum normTypes {L2NORM_P=0, L2NORM_UX, L2NORM_UY, H1SEMI_UX, H1SEMI_UY, _SIZE};
 
  double m_normErr[_SIZE];
  double m_normSol[_SIZE];
  double m_normRef[_SIZE];
 
protected:
  void ComputeNorms(TGridFunction &uref, double *norms)
  {
    int porder = 2;
    int uorder = 4;
 
    norms[L2NORM_P] = L2Norm(uref, "p", porder);
    norms[L2NORM_UX] = L2Norm(uref, "ux", uorder);
    norms[L2NORM_UY] = L2Norm(uref, "uy", uorder);
 
    norms[H1SEMI_UX] = H1SemiNorm(uref, "ux", uorder);
    norms[H1SEMI_UY] = H1SemiNorm(uref, "uy", uorder);
  };
  void ComputeNorms(TGridFunction &uref, double *norms) {…}
 
  /*
  function PrintNorms(normDesc)
  for key, val in pairs(normDesc) do  UG_LOG(key.."\t"..val) end
  end
 
  function CompareNorms(normDesc, errDesc, refDesc)
  for key, val in pairs(normDesc) do  UG_LOG(key.."\t"..val.."\t"..errDesc[key].."\t("..errDesc[key]/refDesc[key]..")") end
  end
  */
  void PrintNorms(double *norms)
  {
    for (int key=0; key<_SIZE; ++key)
    { UG_LOG("KEY" << key << " \t" <<norms[key] << std::endl); }
  }
  void PrintNorms(double *norms) {…}
 
  void CompareNorms(double *normDesc,  double *errDesc, double *refDesc)
  {
      for (int key=0; key<_SIZE; ++key)
      {
        UG_LOG("KEY" << key << " \t"
            << normDesc[key] << "\t"
            << errDesc[key]   << "\t ("
            << (errDesc[key]/refDesc[key]) << ")" << std::endl);
        //UG_LOG(key.."\t"..val.."\t"..errDesc[key].."\t("..errDesc[key]/refDesc[key]..")")
      }
  }
  void CompareNorms(double *normDesc,  double *errDesc, double *refDesc) {…}
protected:
  SmartPtr<BarryMercerRefPressure::pos_data_type> m_spPressure;
  SmartPtr<BarryMercerRefDispX::pos_data_type> m_spDispX;
  SmartPtr<BarryMercerRefDispY::pos_data_type> m_spDispY;
public:
  void init (BarryMercerData& dimCoeffs)
  {
    m_spPressure = make_sp(new BarryMercerRefPressure(dimCoeffs));
    m_spDispX = make_sp(new BarryMercerRefDispX(dimCoeffs));
    m_spDispY = make_sp(new BarryMercerRefDispY(dimCoeffs));
  }
  void init (BarryMercerData& dimCoeffs) {…}
 
  void eval(BarryMercerData& dimCoeffs, TGridFunction &u, int step, double time)
  {
  int napprox = BarryMercerNondimensional::NAPPROX;
  const int dim = TGridFunction::dim;
 
  if (napprox<=0) return;
   UG_LOG ("NAPPROX =" << napprox << std::endl);
 
   // VTK output.
   typedef VTKOutput<dim> TVTKOutput;
   TVTKOutput vtk = TVTKOutput();
 
   // Aux. subsets
   const char* mandatory_subsets = "INNER,SINGULARITY,CORNERS,HORIZONTAL,VERTICAL";
 
   // Aux. vector.
   SmartPtr<TGridFunction> uref = u.clone();
   uref->set(0.0);
 
   const double charTime = dimCoeffs.tchar;
   UG_LOG ("time =" << time << "("<< time/charTime <<")" << std::endl);
 
   // Evaluate reference data.
   this->init(dimCoeffs);
   Interpolate(m_spPressure, uref, "p", mandatory_subsets, time);
   Interpolate(m_spDispX, uref, "ux", mandatory_subsets, time);
   Interpolate(m_spDispY, uref, "uy", mandatory_subsets, time);
 
   // Print solution.
   vtk.print("BarryMercer2D_Sol.vtu", u, step, time);
   vtk.print("BarryMercer2D_Ref.vtu", *uref, step, time);
 
   // Compute norms.
   ComputeNorms(u, m_normSol);
   ComputeNorms(*uref, m_normRef);
 
   UG_LOG ("REFERENCE:");
   PrintNorms(m_normRef);
 
   // Compute errors.
   VecScaleAdd((typename TGridFunction::vector_type&) *uref, 1.0, *uref, -1.0, u);
   vtk.print("BarryMercer2D_Err.vtu", *uref, step, time);
   ComputeNorms(*uref, m_normErr);
 
   UG_LOG ("SOLUTION/ERROR:" << std::endl);
   CompareNorms(m_normSol, m_normErr, m_normRef);
 
 
 
   // More output.
   UG_LOG("deltaP:\t" << time << "\t" << time/charTime  << "\t"
       << m_normErr[L2NORM_P] << "\t"<< m_normSol[L2NORM_P]<<"\t"<< m_normRef[L2NORM_P]<< std::endl);
 
   UG_LOG ("deltaU1A:\t"<<time<<"\t"<<time/charTime<<"\t"
      << m_normErr[H1SEMI_UX] << "\t"<< m_normSol[H1SEMI_UX]<<"\t"<< m_normRef[H1SEMI_UX]<< std::endl);
 
   UG_LOG ("deltaU2A:\t"<<time<<"\t"<<time/charTime<<"\t"
      << m_normErr[H1SEMI_UY] << "\t"<< m_normSol[H1SEMI_UY]<<"\t"<< m_normRef[H1SEMI_UY] << std::endl);
 
   UG_LOG ("deltaU1B:\t"<<time<<"\t"<<time/charTime<<"\t"
         << m_normErr[L2NORM_UX] << "\t"<< m_normSol[L2NORM_UX]<<"\t"<< m_normRef[L2NORM_UX]<< std::endl);
 
   UG_LOG ("deltaU2B:\t"<<time<<"\t"<<time/charTime<<"\t"
         << m_normErr[L2NORM_UY] << "\t"<< m_normSol[L2NORM_UY]<<"\t"<< m_normRef[L2NORM_UY]<< std::endl);
 
 
  }
  void eval(BarryMercerData& dimCoeffs, TGridFunction &u, int step, double time) {…}
 
};
class BarryMercerErrorData {…};
 
 
 
 
 
 
 
template <typename TDomain, typename TAlgebra>
class BarryMercerProblem
: public BiotProblem<TDomain,TAlgebra>
{
public:
 
  typedef BiotProblem<TDomain,TAlgebra> base_type;
  typedef DomainDiscretization<TDomain,TAlgebra> TDomainDisc;
 
private:
  typedef DiracSourceDisc<TDomain> TDiracSourceDisc;
  typedef DirichletBoundary<TDomain,TAlgebra> TDirichletBoundary;
 
public:
 
  BarryMercerProblem(const char* uCmp, const char *pCmp)
  : base_type(uCmp, pCmp, "../grids/barrymercer2D-tri.ugx"), m_a(1.0), m_b(1.0), nskip(1)
  {
    set_default_parameters();
  }
  BarryMercerProblem(const char* uCmp, const char *pCmp) {…}
 
  BarryMercerProblem(const BiotDiscConfig& config)
  : base_type(config, "../grids/barrymercer2D-tri.ugx"), m_a(1.0), m_b(1.0), nskip(1)
  {
    set_default_parameters();
  }
  BarryMercerProblem(const BiotDiscConfig& config) {…}
 
 
  virtual ~BarryMercerProblem() {}
 
 
protected:
 
  void set_default_parameters()
  {
     double E = 1e+5;     // Young's elasticity modulus [Pa]
     double nu = 0.4;       // Poisson's ratio  [1]
 
     double lambda = (E*nu)/((1.0+nu)*(1.0-2.0*nu));
     double mu = 0.5*E/(1+nu);
 
     double kappa = 1e-5;   // Permeability [m*m]
     double muf = 1e-3;     // Pa*s    => Diff Coeff 1e-9
     double alpha = 1.0;
 
     //double Kcomp = E/(3*(1-2*nu)); // compression (or bulk) modulus)
     double Kv = 2.0*E/(1+nu)*(1.0-nu)/(1.0-2.0*nu)  ; // uni-axial drained bulk modulus
 
     double beta_uzawa=(alpha*alpha)/Kv*(2.0-2.0*nu);
 
     base_type::m_params.resize(1);
     base_type::m_params[0]=BiotSubsetParameters("INNER", alpha, kappa/muf, 0.0, lambda, mu, beta_uzawa);
  }
  void set_default_parameters() {…}
 
public:
 
 
 
  double start_time() override
  { return 0.0; }
  double start_time() override {…}
 
  double end_time() override
  { return 2.0*M_PI*base_type::get_char_time(); }
  double end_time() override {…}
 
  void add_elem_discs(SmartPtr<TDomainDisc> dd, bool bSteadyStateMechanics=true) override
  {
    // Add default Biot discs.
    base_type::add_elem_discs(dd, bSteadyStateMechanics);
 
    // Add point source.
    SmartPtr<TDiracSourceDisc> m_pointSourceDisc = make_sp(new TDiracSourceDisc("p", "SINGULARITY"));
 
      double beta = base_type::m_params[0].get_kappa()*( base_type::m_params[0].get_lambda() + 2* base_type::m_params[0].get_mu());
      SmartPtr<BarryMercerPointSource::pos_data_type> m_pointSourceFunc;
      m_pointSourceFunc = make_sp(new BarryMercerPointSource(beta));
 
      MathVector<2> point(0.25, 0.25);
      m_pointSourceDisc->add_source(m_pointSourceFunc, point);
    dd->add(m_pointSourceDisc.template cast_static<typename TDiracSourceDisc::base_type>());
 
    // Add default stabilization.
    const BiotDiscConfig& discretization = base_type::config();
    if (discretization.m_uOrder ==  discretization.m_pOrder) {
      base_type::add_stab_discs(dd, bSteadyStateMechanics);
    }
  }
  void add_elem_discs(SmartPtr<TDomainDisc> dd, bool bSteadyStateMechanics=true) override {…}
 
 
  void interpolate_start_values(SmartPtr<typename base_type::TGridFunction> u, double t0) override
  { u->set(0.0); }
  void interpolate_start_values(SmartPtr<typename base_type::TGridFunction> u, double t0) override {…}
 
  virtual void add_boundary_conditions_u(SmartPtr<TDomainDisc> dd) override
  {
    SmartPtr<TDirichletBoundary> m_spDirichlet = make_sp(new TDirichletBoundary(false));
    m_spDirichlet->add(0.0, "ux", "HORIZONTAL,CORNERS");
    m_spDirichlet->add(0.0, "uy", "VERTICAL,CORNERS");
    dd->add(m_spDirichlet.template cast_static<typename TDirichletBoundary::base_type> ());
  }
  virtual void add_boundary_conditions_u(SmartPtr<TDomainDisc> dd) override {…}
 
  virtual void add_boundary_conditions_p(SmartPtr<TDomainDisc> dd) override
  {
    SmartPtr<TDirichletBoundary> m_spDirichlet = make_sp(new TDirichletBoundary(false));
    m_spDirichlet->add(0.0, "p", "VERTICAL,HORIZONTAL,CORNERS");
    dd->add(m_spDirichlet.template cast_static<typename TDirichletBoundary::base_type> ());
  }
  virtual void add_boundary_conditions_p(SmartPtr<TDomainDisc> dd) override {…}
 
 
 
  bool post_processing(SmartPtr<typename base_type::TGridFunction> u, size_t step, double time) override
  {
    if ((step-1) % nskip !=0 ) return true; // Execute first n
 
    BarryMercerData dimData( base_type::get_char_time(), base_type::m_params[0].get_lambda(), base_type::m_params[0].get_mu());
    m_errData.eval(dimData, *u, step, time);
    return true;
  }
  bool post_processing(SmartPtr<typename base_type::TGridFunction> u, size_t step, double time) override {…}
 
  void set_skip(size_t skip)
  { nskip = skip; }
  void set_skip(size_t skip) {…}
 
protected:
 
  double default_beta() const {
    return  base_type::m_params[0].get_kappa()*( base_type::m_params[0].get_lambda() + 2*base_type::m_params[0].get_mu());
  }
  double default_beta() const  {…}
 
protected:
  double m_a;
  double m_b;
 
  size_t nskip;
 
 
  BarryMercerErrorData<typename base_type::TGridFunction> m_errData;
 
};
class BarryMercerProblem {…};
}
namespace Poroelasticity {…}
}
 
#endif /* POROELASTICITY_BARRY_MERCER_H_ */