assembled_linear_operator_impl.h

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/*
 * Copyright (c) 2011-2015:  G-CSC, Goethe University Frankfurt
 * Author: Andreas Vogel
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__UG__LIB_DISC__OPERATOR__LINEAR_OPERATOR__ASSEMBLED_LINEAR_OPERATOR_IMPL__
#define __H__UG__LIB_DISC__OPERATOR__LINEAR_OPERATOR__ASSEMBLED_LINEAR_OPERATOR_IMPL__
 
#include "assembled_linear_operator.h"
#include "common/profiler/profiler.h"
 
#define PROFILE_ASS
#ifdef PROFILE_ASS
  #define ASS_PROFILE_FUNC()    PROFILE_FUNC()
  #define ASS_PROFILE_BEGIN(name) PROFILE_BEGIN_GROUP(name, "discretization")
  #define ASS_PROFILE_END()   PROFILE_END()
#else
  #define ASS_PROFILE_FUNC()
  #define ASS_PROFILE_BEGIN(name)
  #define ASS_PROFILE_END()
#endif
 
namespace ug{
 
template <typename TAlgebra>
void
AssembledLinearOperator<TAlgebra>::init(const vector_type& u)
{
  if(m_spAss.invalid())
    UG_THROW("AssembledLinearOperator: Assembling routine not set.");
 
//  assemble matrix (depending on u, i.e. J(u))
  try{
    m_spAss->assemble_jacobian(*this, u, m_gridLevel);
  }
  UG_CATCH_THROW("AssembledLinearOperator: Cannot assemble Jacobi matrix.");
}
AssembledLinearOperator<TAlgebra>::init(const vector_type& u) {…}
 
//  Initialize the operator
template <typename TAlgebra>
void
AssembledLinearOperator<TAlgebra>::init()
{
  if(m_spAss.invalid())
    UG_THROW("AssembledLinearOperator: Assembling routine not set.");
 
//  create vector dummy
  vector_type dummy;
 
//  assemble only matrix
  try{
    m_spAss->assemble_linear(*this, dummy, m_gridLevel);
  }
  UG_CATCH_THROW("AssembledLinearOperator::init: Cannot assemble Matrix.");
}
AssembledLinearOperator<TAlgebra>::init() {…}
 
//  Initialize the operator
template <typename TAlgebra>
void
AssembledLinearOperator<TAlgebra>::init_op_and_rhs(vector_type& b)
{
//  todo: check that assembling is linear
 
  if(m_spAss.invalid())
    UG_THROW("AssembledLinearOperator: Assembling routine not set.");
 
//  assemble matrix and rhs in one loop
  try{
    m_spAss->assemble_linear(*this, b, m_gridLevel);
  }
  UG_CATCH_THROW("AssembledLinearOperator::init_op_and_rhs:"
            " Cannot assemble Matrix and Rhs.");
}
 
template <typename TAlgebra>
void
AssembledLinearOperator<TAlgebra>::apply(vector_type& d, const vector_type& c)
{
#ifdef UG_PARALLEL
  if(!c.has_storage_type(PST_CONSISTENT))
    UG_THROW("Inadequate storage format of Vector c.");
#endif
 
//  perform check of sizes
  if(c.size() != this->num_cols() || d.size() != this->num_rows())
    UG_THROW("AssembledLinearOperator::apply: Size of matrix A ["<<
            this->num_rows() << " x " << this->num_cols() << "] must match the "
            "sizes of vectors x ["<<c.size()<<"], b ["<<d.size()<<"] for the "
            " operation b = A*x. Maybe the operator is not initialized ?");
 
//  Apply Matrix
  base_type::apply(d, c);
}
 
//  Compute d := d - J(u)*c
template <typename TAlgebra>
void
AssembledLinearOperator<TAlgebra>::apply_sub(vector_type& d, const vector_type& c)
{
#ifdef UG_PARALLEL
  if(!d.has_storage_type(PST_ADDITIVE))
    UG_THROW("Inadequate storage format of Vector d.");
  if(!c.has_storage_type(PST_CONSISTENT))
    UG_THROW("Inadequate storage format of Vector c.");
#endif
 
//  check sizes
  if(c.size() != this->num_cols() || d.size() != this->num_rows())
    UG_THROW("AssembledLinearOperator::apply_sub: Size of matrix A ["<<
            this->num_rows() << " x " << this->num_cols() << "] must match the "
            "sizes of vectors x ["<<c.size()<<"], b ["<<d.size()<<"] for the "
            " operation b -= A*x. Maybe the operator is not initialized ?");
 
//  Apply Matrix
  base_type::matmul_minus(d,c);
}
AssembledLinearOperator<TAlgebra>::apply_sub(vector_type& d, const vector_type& c) {…}
 
 
template <typename TAlgebra>
void AssembledLinearOperator<TAlgebra>::set_dirichlet_values(vector_type& u)
{
//  checks
  if(m_spAss.invalid())
    UG_THROW("AssembledLinearOperator: Assembling routine not set.");
 
//  set dirichlet values etc.
  try{
    m_spAss->adjust_solution(u, m_gridLevel);
  }
  UG_CATCH_THROW("AssembledLinearOperator::set_dirichlet_values:"
        " Cannot assemble solution.");
}
void AssembledLinearOperator<TAlgebra>::set_dirichlet_values(vector_type& u) {…}
    UG_THROW("AssembledLinearOperator::apply: Size of matrix A ["<< {…}
 
 
template <typename TAlgebra>
void AssembleLinearOperatorRhsAndSolution
    (AssembledLinearOperator<TAlgebra>& op,
     typename TAlgebra::vector_type& u,
     typename TAlgebra::vector_type& b)
{
  ASS_PROFILE_BEGIN(ASS_AssembleLinearOperatorRhsAndSolution);
 
//  initialize operator
  ASS_PROFILE_BEGIN(ASS_InitOperatorAndRhs);
  try{
    op.init_op_and_rhs(b);
  }UG_CATCH_THROW("Cannot init the operator (assembling failed).");
  ASS_PROFILE_END();
 
//  sets the dirichlet values in the solution
  ASS_PROFILE_BEGIN(ASS_SetDirValues);
  try{
    op.set_dirichlet_values(u);
  } UG_CATCH_THROW("Cannot set the dirichlet values in the solution.");
  ASS_PROFILE_END();
 
  ASS_PROFILE_END();
}
void AssembleLinearOperatorRhsAndSolution {…}
 
 
} // end namespace ug
 
#endif /* __H__UG__LIB_DISC__OPERATOR__LINEAR_OPERATOR__ASSEMBLED_LINEAR_OPERATOR_IMPL__ */
  {…}
  if(!c.has_storage_type(PST_CONSISTENT)) {…}
AssembledLinearOperator<TAlgebra>::apply(vector_type& d, const vector_type& c) {…}
  {…}
  UG_CATCH_THROW("AssembledLinearOperator::init_op_and_rhs:" {…}
AssembledLinearOperator<TAlgebra>::init_op_and_rhs(vector_type& b) {…}