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gauss_seidel.h
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1/*
2 * Copyright (c) 2010-2015: G-CSC, Goethe University Frankfurt
3 * Author: Martin Rupp
4 *
5 * This file is part of UG4.
6 *
7 * UG4 is free software: you can redistribute it and/or modify it under the
8 * terms of the GNU Lesser General Public License version 3 (as published by the
9 * Free Software Foundation) with the following additional attribution
10 * requirements (according to LGPL/GPL v3 §7):
11 *
12 * (1) The following notice must be displayed in the Appropriate Legal Notices
13 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
14 *
15 * (2) The following notice must be displayed at a prominent place in the
16 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
17 *
18 * (3) The following bibliography is recommended for citation and must be
19 * preserved in all covered files:
20 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
21 * parallel geometric multigrid solver on hierarchically distributed grids.
22 * Computing and visualization in science 16, 4 (2013), 151-164"
23 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
24 * flexible software system for simulating pde based models on high performance
25 * computers. Computing and visualization in science 16, 4 (2013), 165-179"
26 *
27 * This program is distributed in the hope that it will be useful,
28 * but WITHOUT ANY WARRANTY; without even the implied warranty of
29 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
30 * GNU Lesser General Public License for more details.
31 */
32
33#ifndef __H__UG__LIB_DISC__OPERATOR__LINEAR_OPERATOR__GAUSS_SEIDEL__
34#define __H__UG__LIB_DISC__OPERATOR__LINEAR_OPERATOR__GAUSS_SEIDEL__
35
39#ifdef UG_PARALLEL
43#endif
44
47
48namespace ug{
49
50template<typename TAlgebra>
51class GaussSeidelBase : public IPreconditioner<TAlgebra>
52{
53 public:
54 // Algebra type
55 typedef TAlgebra algebra_type;
56
57 // Vector type
58 typedef typename TAlgebra::vector_type vector_type;
59
60 // Matrix type
61 typedef typename TAlgebra::matrix_type matrix_type;
62
65
68
70 typedef std::vector<size_t> ordering_container_type;
72
73 protected:
77
78 public:
79 // Constructor
81 m_relax(1.0),
83 m_useOverlap(false) {};
84
94
96 void set_sor_relax(number relaxFactor){ m_relax = relaxFactor;}
97
100
101 void enable_overlap (bool enable) {m_useOverlap = enable;}
102
105 m_spOrderingAlgo = ordering_algo;
106 }
107
108 virtual const char* name() const = 0;
109 protected:
110
111 virtual bool supports_parallel() const {return true;}
112
113 // Preprocess routine
115 {
116 PROFILE_BEGIN_GROUP(GaussSeidel_preprocess, "algebra gaussseidel");
117 matrix_type *pA;
118#ifdef UG_PARALLEL
119 if(pcl::NumProcs() > 1)
120 {
121 if(m_useOverlap){
122 m_A = *pOp;
124 m_oD.set_layouts(m_A.layouts());
125 m_oC.set_layouts(m_A.layouts());
126 m_oD.resize(m_A.num_rows(), false);
127 m_oC.resize(m_A.num_rows(), false);
128 }
130 {
131 m_A = *pOp;
133 }
134 else
135 {
136 // copy original matrix
137 MakeConsistent(*pOp, m_A);
138 // set zero on slaves
139 std::vector<IndexLayout::Element> vIndex;
140 CollectUniqueElements(vIndex, m_A.layouts()->slave());
141 SetDirichletRow(m_A, vIndex);
142 }
143 pA = &m_A;
144 }
145 else
146 pA = &(*pOp);
147#else
148 pA = &(*pOp);
149#endif
150 THROW_IF_NOT_EQUAL(pA->num_rows(), pA->num_cols());
151// UG_ASSERT(CheckDiagonalInvertible(A), "GS: A has noninvertible diagonal");
152 UG_COND_THROW(CheckDiagonalInvertible(*pA) == false, name() << ": A has noninvertible diagonal");
153
154 return true;
155 }
156
157 // Postprocess routine
158 virtual bool postprocess() {return true;}
159
160 virtual void step(const matrix_type &A, vector_type &c, const vector_type &d, const number relax) = 0;
161
162 // Stepping routine
164 {
165 PROFILE_BEGIN_GROUP(GaussSeidel_step, "algebra gaussseidel");
166
167#ifdef UG_PARALLEL
168 if(pcl::NumProcs() > 1)
169 {
170 if(m_useOverlap){
171 for(size_t i = 0; i < d.size(); ++i)
172 m_oD[i] = d[i];
173 for(size_t i = d.size(); i < m_oD.size(); ++i)
174 m_oD[i] = 0;
175 m_oD.set_storage_type(PST_ADDITIVE);
176 m_oD.change_storage_type(PST_CONSISTENT);
177
179
180 for(size_t i = 0; i < c.size(); ++i)
181 c[i] = m_oC[i];
182 SetLayoutValues(&c, c.layouts()->slave(), 0);
183 c.set_storage_type(PST_UNIQUE);
184 }
186 {
187 // make defect consistent
188 SmartPtr<vector_type> spDtmp = d.clone();
189 spDtmp->change_storage_type(PST_CONSISTENT);
190
191 THROW_IF_NOT_EQUAL_3(c.size(), spDtmp->size(), m_A.num_rows());
192 step(m_A, c, *spDtmp, m_relax);
193
194 // declare c unique to enforce that only master correction is used
195 // when it is made consistent below
196 c.set_storage_type(PST_UNIQUE);
197
198 //UG_COND_THROW(!d.has_storage_type(PST_ADDITIVE), "Additive or unique defect expected.");
199 //step(m_A, c, d, m_relax);
200 //c.set_storage_type(PST_ADDITIVE);
201 }
202 else
203 {
204 // todo: do not clone every time
205 // make defect unique
206 SmartPtr<vector_type> spDtmp = d.clone();
207 spDtmp->change_storage_type(PST_UNIQUE);
208
209 THROW_IF_NOT_EQUAL_3(c.size(), spDtmp->size(), m_A.num_rows());
210 step(m_A, c, *spDtmp, m_relax);
211 c.set_storage_type(PST_UNIQUE);
212 }
213
214 // make correction consistent
215 c.change_storage_type(PST_CONSISTENT);
216
217 return true;
218 }
219 else
220#endif
221 {
222 matrix_type &A = *pOp;
223 THROW_IF_NOT_EQUAL_4(c.size(), d.size(), A.num_rows(), A.num_cols());
224
225 step(A, c, d, m_relax);
226#ifdef UG_PARALLEL
227 c.set_storage_type(PST_CONSISTENT);
228#endif
229 return true;
230 }
231 }
232
233 protected:
234#ifdef UG_PARALLEL
236#endif
237 protected:
240
244
247
248
251#ifdef NOT_YET
252 ordering_container_type m_ordering, m_old_ordering;
253 std::vector<size_t> m_newIndex, m_oldIndex;
254 bool m_bSortIsIdentity;
255#endif
256};
257
259
270template <typename TAlgebra>
271class GaussSeidel : public GaussSeidelBase<TAlgebra>
272{
273 typedef TAlgebra algebra_type;
274 typedef typename TAlgebra::vector_type vector_type;
275 typedef typename TAlgebra::matrix_type matrix_type;
277
278public:
279 // Name of preconditioner
280 virtual const char* name() const {return "Gauss-Seidel";}
281
284
287 : base_type(parent)
288 { }
289
292 {
293 return make_sp(new GaussSeidel<algebra_type>(*this));
294 }
295
296 // Stepping routine
297 virtual void step(const matrix_type &A, vector_type &c, const vector_type &d, const number relax)
298 {
299 gs_step_LL(A, c, d, relax);
300 }
301};
302
304
315template <typename TAlgebra>
316class BackwardGaussSeidel : public GaussSeidelBase<TAlgebra>
317{
318 typedef TAlgebra algebra_type;
319 typedef typename TAlgebra::vector_type vector_type;
320 typedef typename TAlgebra::matrix_type matrix_type;
322
323public:
324 // Name of preconditioner
325 virtual const char* name() const {return "Backward Gauss-Seidel";}
326
329
332 : base_type(parent)
333 { }
334
340
341 // Stepping routine
342 virtual void step(const matrix_type &A, vector_type &c, const vector_type &d, const number relax)
343 {
344 gs_step_UR(A, c, d, relax);
345 }
346};
347
348
349template <typename TAlgebra>
350class SymmetricGaussSeidel : public GaussSeidelBase<TAlgebra>
351{
352 typedef TAlgebra algebra_type;
353 typedef typename TAlgebra::vector_type vector_type;
354 typedef typename TAlgebra::matrix_type matrix_type;
356
357public:
358 // Name of preconditioner
359 virtual const char* name() const {return "Symmetric Gauss-Seidel";}
360
363
366 : base_type(parent)
367 { }
368
374
375 // Stepping routine
376 virtual void step(const matrix_type &A, vector_type &c, const vector_type &d, const number relax)
377 {
378 sgs_step(A, c, d, relax);
379 }
380};
381
382} // end namespace ug
383
384#endif // __H__UG__LIB_DISC__OPERATOR__LINEAR_OPERATOR__GAUSS_SEIDEL__
Definition smart_pointer.h:108
Gauss-Seidel preconditioner for the 'backward' ordering of the dofs.
Definition gauss_seidel.h:317
TAlgebra algebra_type
Definition gauss_seidel.h:318
TAlgebra::matrix_type matrix_type
Definition gauss_seidel.h:320
BackwardGaussSeidel()
constructor
Definition gauss_seidel.h:328
virtual SmartPtr< ILinearIterator< vector_type > > clone()
Clone.
Definition gauss_seidel.h:336
virtual const char * name() const
returns the name of iterator
Definition gauss_seidel.h:325
GaussSeidelBase< TAlgebra > base_type
Definition gauss_seidel.h:321
BackwardGaussSeidel(const BackwardGaussSeidel< TAlgebra > &parent)
clone constructor
Definition gauss_seidel.h:331
TAlgebra::vector_type vector_type
Definition gauss_seidel.h:319
virtual void step(const matrix_type &A, vector_type &c, const vector_type &d, const number relax)
Definition gauss_seidel.h:342
virtual void set_debug(SmartPtr< IDebugWriter< algebra_type > > spDebugWriter)
set debug writer
Definition debug_writer.h:384
void write_debug(const matrix_type &mat, const char *filename)
write debug output for a matrix (if debug writer set)
Definition debug_writer.h:399
SmartPtr< IDebugWriter< algebra_type > > debug_writer()
returns the debug writer
Definition debug_writer.h:391
Definition gauss_seidel.h:52
IPreconditioner< TAlgebra > base_type
Base type.
Definition gauss_seidel.h:67
virtual const char * name() const =0
returns the name of iterator
void enable_overlap(bool enable)
Definition gauss_seidel.h:101
void enable_consistent_interfaces(bool enable)
activates the new parallelization approach (disabled by default)
Definition gauss_seidel.h:99
GaussSeidelBase(const GaussSeidelBase< TAlgebra > &parent)
clone constructor
Definition gauss_seidel.h:86
void set_sor_relax(number relaxFactor)
set relaxation parameter to define a SOR-method
Definition gauss_seidel.h:96
bool m_bConsistentInterfaces
Definition gauss_seidel.h:245
number m_relax
relaxation parameter
Definition gauss_seidel.h:239
bool m_useOverlap
Definition gauss_seidel.h:246
TAlgebra::vector_type vector_type
Definition gauss_seidel.h:58
void set_ordering_algorithm(SmartPtr< ordering_algo_type > ordering_algo)
sets an ordering algorithm
Definition gauss_seidel.h:104
IPreconditioner< TAlgebra >::matrix_operator_type matrix_operator_type
Matrix Operator type.
Definition gauss_seidel.h:64
virtual bool step(SmartPtr< MatrixOperator< matrix_type, vector_type > > pOp, vector_type &c, const vector_type &d)
computes a new correction c = B*d
Definition gauss_seidel.h:163
GaussSeidelBase()
Definition gauss_seidel.h:80
vector_type m_oD
for overlaps only
Definition gauss_seidel.h:242
TAlgebra algebra_type
Definition gauss_seidel.h:55
SmartPtr< ordering_algo_type > m_spOrderingAlgo
for ordering algorithms
Definition gauss_seidel.h:250
TAlgebra::matrix_type matrix_type
Definition gauss_seidel.h:61
IOrderingAlgorithm< TAlgebra, ordering_container_type > ordering_algo_type
Definition gauss_seidel.h:71
virtual bool postprocess()
cleans the operator
Definition gauss_seidel.h:158
vector_type m_oC
Definition gauss_seidel.h:243
virtual bool preprocess(SmartPtr< MatrixOperator< matrix_type, vector_type > > pOp)
initializes the preconditioner
Definition gauss_seidel.h:114
matrix_type m_A
Definition gauss_seidel.h:235
virtual void step(const matrix_type &A, vector_type &c, const vector_type &d, const number relax)=0
std::vector< size_t > ordering_container_type
Ordering type.
Definition gauss_seidel.h:70
virtual bool supports_parallel() const
returns if parallel solving is supported
Definition gauss_seidel.h:111
Gauss-Seidel preconditioner for the 'forward' ordering of the dofs.
Definition gauss_seidel.h:272
GaussSeidel(const GaussSeidel< TAlgebra > &parent)
clone constructor
Definition gauss_seidel.h:286
GaussSeidelBase< TAlgebra > base_type
Definition gauss_seidel.h:276
TAlgebra::vector_type vector_type
Definition gauss_seidel.h:274
virtual SmartPtr< ILinearIterator< vector_type > > clone()
Clone.
Definition gauss_seidel.h:291
TAlgebra algebra_type
Definition gauss_seidel.h:273
GaussSeidel()
constructor
Definition gauss_seidel.h:283
virtual void step(const matrix_type &A, vector_type &c, const vector_type &d, const number relax)
Definition gauss_seidel.h:297
virtual const char * name() const
returns the name of iterator
Definition gauss_seidel.h:280
TAlgebra::matrix_type matrix_type
Definition gauss_seidel.h:275
Definition IOrderingAlgorithm.h:52
describes a linear iterator that is based on a matrix operator
Definition preconditioner.h:103
Definition gauss_seidel.h:351
SymmetricGaussSeidel(const SymmetricGaussSeidel< TAlgebra > &parent)
clone constructor
Definition gauss_seidel.h:365
virtual const char * name() const
returns the name of iterator
Definition gauss_seidel.h:359
TAlgebra::matrix_type matrix_type
Definition gauss_seidel.h:354
GaussSeidelBase< TAlgebra > base_type
Definition gauss_seidel.h:355
SymmetricGaussSeidel()
constructor
Definition gauss_seidel.h:362
virtual void step(const matrix_type &A, vector_type &c, const vector_type &d, const number relax)
Definition gauss_seidel.h:376
virtual SmartPtr< ILinearIterator< vector_type > > clone()
Clone.
Definition gauss_seidel.h:370
TAlgebra::vector_type vector_type
Definition gauss_seidel.h:353
TAlgebra algebra_type
Definition gauss_seidel.h:352
void SetLayoutValues(TVector *pVec, const IndexLayout &layout, typename TVector::value_type val)
sets the values of a vector to a given number only on the layout indices
Definition parallelization_util.h:315
void MatMakeConsistentOverlap0(TMatrix &mat)
Generates a set of unique global algebra ids.
Definition parallelization_util.h:126
@ PST_CONSISTENT
Definition parallel_storage_type.h:68
@ PST_UNIQUE
Definition parallel_storage_type.h:70
@ PST_ADDITIVE
Definition parallel_storage_type.h:69
bool CheckDiagonalInvertible(const TSparseMatrix &A)
Definition sparsematrix_util.h:1094
void gs_step_UR(const Matrix_type &A, Vector_type &c, const Vector_type &d, const number relaxFactor)
Performs a backward gauss-seidel-step, that is, solve on the upper right of A. Using gs_step_UR withi...
Definition core_smoothers.h:150
void gs_step_LL(const Matrix_type &A, Vector_type &c, const Vector_type &d, const number relaxFactor)
Gauss-Seidel-Iterations.
Definition core_smoothers.h:106
void SetDirichletRow(TSparseMatrix &A, size_t i, size_t alpha)
Definition sparsematrix_util.h:796
void sgs_step(const Matrix_type &A, Vector_type &c, const Vector_type &d, const number relaxFactor)
Performs a symmetric gauss-seidel step. Using sgs_step within a preconditioner-scheme leads to the fa...
Definition core_smoothers.h:189
int NumProcs()
returns the number of processes
Definition pcl_base.cpp:91
#define THROW_IF_NOT_EQUAL_4(s1, s2, s3, s4)
Definition error.h:183
#define THROW_IF_NOT_EQUAL_3(s1, s2, s3)
Definition error.h:182
#define THROW_IF_NOT_EQUAL(s1, s2)
Definition error.h:181
#define UG_COND_THROW(cond, msg)
UG_COND_THROW(cond, msg) : performs a UG_THROW(msg) if cond == true.
Definition error.h:61
double number
Definition types.h:124
the ug namespace
bool MakeConsistent(const ParallelMatrix< matrix_type > &_mat, ParallelMatrix< matrix_type > &newMat)
Definition parallel_matrix_overlap_impl.h:438
void CreateOverlap(TMatrix &matInOut)
Adds coefficients and connections to create an overlapping matrix.
Definition matrix_overlap_impl.h:434
#define PROFILE_BEGIN_GROUP(name, groups)
Definition profiler.h:255
SmartPtr< T, FreePolicy > make_sp(T *inst)
returns a SmartPtr for the passed raw pointer
Definition smart_pointer.h:836