collect_matrix.h

Go to the documentation of this file.

/*
 * Copyright (c) 2011-2015:  G-CSC, Goethe University Frankfurt
 * Author: Martin Rupp
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__LIB_ALGEBRA__COLLECT_MATRIX_H_
#define __H__LIB_ALGEBRA__COLLECT_MATRIX_H_
 
#include "parallel_nodes.h"
#include "serialize_interfaces.h"
#include "common/debug_print.h"
 
namespace ug{
 
template<typename matrix_type>
void SerializeRow(BinaryBuffer &stream, const matrix_type &mat, size_t localRowIndex, ParallelNodes &PN)
{
  PROFILE_FUNC_GROUP("algebra parallelization");
  const AlgebraID &globalRowIndex = PN.local_to_global(localRowIndex);
  UG_COND_THROW(globalRowIndex.master_proc() > pcl::NumProcs() || globalRowIndex.master_proc() < 0, globalRowIndex);
  // serialize global row index
  Serialize(stream, globalRowIndex);
 
  size_t num_connections = mat.num_connections(localRowIndex);
 
  // serialize number of connections
  Serialize(stream, num_connections);
  UG_DLOG(LIB_ALG_AMG, 4, "Sending row " << localRowIndex << " (" << globalRowIndex << "), " << num_connections << " cons: ");
 
  for(typename matrix_type::const_row_iterator conn = mat.begin_row(localRowIndex);
            conn != mat.end_row(localRowIndex); ++conn)
  {
    size_t localColIndex = conn.index();
    const AlgebraID &globalColIndex = PN.local_to_global(localColIndex);
    UG_COND_THROW(globalColIndex.master_proc() > pcl::NumProcs() || globalColIndex.master_proc() < 0, globalColIndex);
 
    UG_DLOG(LIB_ALG_AMG, 4, localColIndex << " (" << globalColIndex << ") -> " << conn.value() << " ");
 
    // serialize connection
    Serialize(stream, globalColIndex);
    Serialize(stream, conn.value());
  }
  UG_DLOG(LIB_ALG_AMG, 4, "\n");
}
void SerializeRow(BinaryBuffer &stream, const matrix_type &mat, size_t localRowIndex, ParallelNodes &PN) {…}
 
 
template<typename matrix_type>
void SendMatrix(const matrix_type &A, IndexLayout &verticalSlaveLayout, int destproc, ParallelNodes &PN)
{
  PROFILE_FUNC_GROUP("algebra parallelization");
  UG_DLOG(LIB_ALG_AMG, 1, "\n*********** SendMatrix ************\n\n");
 
  pcl::InterfaceCommunicator<IndexLayout> &communicator = A.layouts()->comm();
  BinaryBuffer stream;
 
  Serialize(stream, A.num_rows());
  for(size_t i=0; i<A.num_rows(); i++)
    SerializeRow(stream, A, i, PN);
 
  SerializeLayout(stream, A.layouts()->master(), PN);
  SerializeLayout(stream, A.layouts()->slave(), PN);
 
  IndexLayout::Interface &verticalInterface = verticalSlaveLayout.interface(destproc);
  for(size_t i=0; i<A.num_rows(); i++)
    verticalInterface.push_back(i);
 
  UG_DLOG(LIB_ALG_AMG, 3, "Srcproc " << pcl::ProcRank() << " is sending " << stream.write_pos() << " bytes of data to destproc " << destproc << "\n");
  communicator.send_raw(destproc, stream.buffer(), stream.write_pos(), false);
  communicator.communicate();
}
void SendMatrix(const matrix_type &A, IndexLayout &verticalSlaveLayout, int destproc, ParallelNodes &PN) {…}
 
template<typename TConnectionType>
size_t DeserializeRow(BinaryBuffer &stream, stdvector<TConnectionType> &cons, ParallelNodes &PN)
{
  PROFILE_FUNC_GROUP("algebra parallelization");
  AlgebraID globalRowIndex;
 
  // serialize global row index
  Deserialize(stream, globalRowIndex);
  size_t localRowIndex = PN.global_to_local(globalRowIndex);
 
  UG_DLOG(LIB_ALG_AMG, 4, "Got row " << localRowIndex << " (" << globalRowIndex << "), ");
  size_t num_connections;
 
  // serialize number of connections
  Deserialize(stream, num_connections);
 
  UG_DLOG(LIB_ALG_AMG, 4, num_connections << " connections: ");
 
  cons.resize(num_connections);
  for(size_t i =0; i<num_connections; i++)
  {
    AlgebraID globalColIndex;
    Deserialize(stream, globalColIndex);
    cons[i].iIndex = PN.global_to_local(globalColIndex);
    Deserialize(stream, cons[i].dValue);
    UG_DLOG(LIB_ALG_AMG, 4, cons[i].iIndex << " (" << globalColIndex << ") -> " << cons[i].dValue << " ");
  }
  UG_DLOG(LIB_ALG_AMG, 4, "\n");
  return localRowIndex;
}
size_t DeserializeRow(BinaryBuffer &stream, stdvector<TConnectionType> &cons, ParallelNodes &PN) {…}
 
// ReceiveMatrix
//---------------------------------------------------------------------------
template<typename matrix_type>
void ReceiveMatrix(const matrix_type &A, matrix_type &M, IndexLayout &verticalMasterLayout, const std::vector<int> &srcprocs,
    ParallelNodes &PN)
{
  PROFILE_FUNC_GROUP("algebra parallelization");
  UG_DLOG(LIB_ALG_AMG, 1, "\n*********** ReceiveMatrix ************\n\n");
  pcl::InterfaceCommunicator<IndexLayout> &communicator = A.layouts()->comm();
 
  M = A;
  //M.print();
  M.set_layouts(SmartPtr<AlgebraLayouts>(new AlgebraLayouts));
  typedef std::map<int, BinaryBuffer> BufferMap;
  BufferMap streams;
 
  UG_DLOG(LIB_ALG_AMG, 3, "DestProc " << pcl::ProcRank() << " is waiting on data from ");
  for(size_t i=0; i<srcprocs.size(); i++)
  {
    UG_DLOG(LIB_ALG_AMG, 3, srcprocs[i] << " ");
    communicator.receive_raw(srcprocs[i], streams[srcprocs[i]]);
  }
  UG_DLOG(LIB_ALG_AMG, 3, "\n");
  communicator.communicate();
 
  AlgebraID globalRowIndex, globalColIndex;;
  size_t num_connections, numRows;
 
  for(size_t i=0; i<srcprocs.size(); i++)
  {
    int pid = srcprocs[i];
    BinaryBuffer &stream = streams[pid];
    stream.set_read_pos(0);
 
    UG_DLOG(LIB_ALG_AMG, 4, "received " << stream.write_pos() << " bytes of data from process " << pid << "\n");
    IndexLayout::Interface &verticalInterface = verticalMasterLayout.interface(pid);
    typename matrix_type::connection con;
 
    Deserialize(stream, numRows);
    for(size_t i=0; i<numRows; i++)
    {
      // serialize global row index, number of connections
      Deserialize(stream, globalRowIndex);
      Deserialize(stream, num_connections);
      UG_COND_THROW(globalRowIndex.master_proc() > pcl::NumProcs() || globalRowIndex.master_proc() < 0, i << " " << globalRowIndex << " " << pid);
 
      size_t localRowIndex = PN.get_local_index_or_create_new(globalRowIndex, 0);
      verticalInterface.push_back(localRowIndex);
      UG_DLOG(LIB_ALG_AMG, 4, "Got row " << localRowIndex << " (" << globalRowIndex << "), ");
      UG_DLOG(LIB_ALG_AMG, 4, num_connections << " connections: ");
 
      for(size_t pid =0; pid<num_connections; pid++)
      {
        Deserialize(stream, globalColIndex);
        Deserialize(stream, con.dValue);
 
        con.iIndex = PN.get_local_index_or_create_new(globalColIndex, 0);
        UG_DLOG(LIB_ALG_AMG, 4, con.iIndex << " (" << globalColIndex << ") -> " << con.dValue << " ");
      }
      UG_DLOG(LIB_ALG_AMG, 4, "\n");
    }
  }
 
  M.resize_and_keep_values(PN.local_size(), PN.local_size());
  //M.print();
 
  for(size_t i=0; i<srcprocs.size(); i++)
  {
    int pid = srcprocs[i];
    BinaryBuffer &stream = streams[pid];
    stream.set_read_pos(0);
    stdvector<typename matrix_type::connection> cons;
 
    Deserialize(stream, numRows);
    for(size_t i=0; i<numRows; i++)
    {
      size_t localRowIndex = DeserializeRow(stream, cons, PN);
      if(cons.size())
        M.add_matrix_row(localRowIndex, &cons[0], cons.size());
    }
  }
 
  //UG_DLOG(LIB_ALG_AMG, 4, "\n** the matrix M: \n\n");
  //M.print();
  //UG_DLOG(LIB_ALG_AMG, 4, "\n");
 
  //UG_LOG("COLLECTED LAYOUT:\n");
  //PrintLayout(processCommunicator, communicator, masterLayout, slaveLayout);
}
void ReceiveMatrix(const matrix_type &A, matrix_type &M, IndexLayout &verticalMasterLayout, const std::vector<int> &srcprocs, {…}
 
template<typename matrix_type>
void CollectMatrixOnOneProc(const matrix_type &A, matrix_type &collectedA, IndexLayout &masterLayout, IndexLayout &slaveLayout)
{
  try{
  PROFILE_FUNC_GROUP("algebra parallelization");
  UG_DLOG(LIB_ALG_AMG, 1, "\n*********** SendMatrix ************\n\n");
  std::vector<int> srcprocs;
  masterLayout.clear();
  slaveLayout.clear();
 
  const pcl::ProcessCommunicator &pc = A.layouts()->proc_comm();
  ParallelNodes PN(A.layouts(), A.num_rows());
 
  if(pcl::ProcRank() == pc.get_proc_id(0))
  {
    srcprocs.resize(pc.size()-1);
    for(size_t i=1; i<pc.size(); i++)
      srcprocs[i-1] = pc.get_proc_id(i);
    ReceiveMatrix(A, collectedA, masterLayout, srcprocs, PN);
  }
  else
    SendMatrix(A, slaveLayout, pc.get_proc_id(0), PN);
  }UG_CATCH_THROW(__FUNCTION__ << " failed");
}
void CollectMatrixOnOneProc(const matrix_type &A, matrix_type &collectedA, IndexLayout &masterLayout, IndexLayout &slaveLayout) {…}
 
template<typename T>
void GatherVectorOnOne(IndexLayout &agglomeratedMaster, IndexLayout &agglomeratedSlave,
    pcl::InterfaceCommunicator<IndexLayout> &com,
    ParallelVector<T> &collectedVec,
    const ParallelVector<T> &vec,
    ParallelStorageType type, bool bRoot)
{
  try{
  PROFILE_FUNC_GROUP("algebra parallelization");
  typedef ParallelVector<T> vector_type;
  if(!bRoot)
  {
    ComPol_VecAdd<vector_type > compolAdd(&collectedVec, &vec);
    com.send_data(agglomeratedSlave, compolAdd);
    com.communicate();
  }
  else
  {
    //UG_LOG("gather_vertical: receiving data at level " << level << "\n");
    UG_COND_THROW(&vec == &collectedVec, "vec and collected vec may not be same");
    collectedVec.set(0.0);
    for(size_t i=0; i<vec.size(); i++)
      collectedVec[i] = vec[i];
 
    UG_COND_THROW(!vec.has_storage_type(type), "storage type is " << vec.get_storage_type() << ", not " << type);
    if(type == PST_ADDITIVE)
    {
      ComPol_VecAdd<vector_type > compolAdd(&collectedVec, &vec);
      com.receive_data(agglomeratedMaster, compolAdd);
      com.communicate();
      collectedVec.set_storage_type(PST_ADDITIVE);
    }
    else if(type == PST_CONSISTENT)
    {
      ComPol_VecCopy<vector_type > compolCopy(&collectedVec, &vec);
      com.receive_data(agglomeratedMaster, compolCopy);
      com.communicate();
      collectedVec.set_storage_type(PST_CONSISTENT);
    }
    else { UG_THROW("storage type " << type << "unsupported."); }
  }
  }UG_CATCH_THROW(__FUNCTION__ << " failed");
}
void GatherVectorOnOne(IndexLayout &agglomeratedMaster, IndexLayout &agglomeratedSlave, {…}
 
template<typename T>
void BroadcastVectorFromOne(IndexLayout &agglomeratedMaster, IndexLayout &agglomeratedSlave,
    pcl::InterfaceCommunicator<IndexLayout> &com,
    ParallelVector<T> &vec,
    const ParallelVector<T> &collectedVec,
    ParallelStorageType type, bool bRoot)
{
  PROFILE_FUNC_GROUP("algebra parallelization");
  try{
  typedef ParallelVector<T> vector_type;
  if(!bRoot)
  {
    ComPol_VecCopy<vector_type> compolCopy(&vec, &collectedVec);
    com.receive_data(agglomeratedSlave, compolCopy);
    com.communicate();
    vec.set_storage_type(type);
  }
  else
  {
    UG_COND_THROW(&vec == &collectedVec, "vec and collected vec may not be same");
    for(size_t i=0; i<vec.size(); i++)
      vec[i] = collectedVec[i];
 
    UG_COND_THROW(!collectedVec.has_storage_type(type), "storage type is " << collectedVec.get_storage_type() << ", not " << type);
    vec.set_storage_type(type);
 
    ComPol_VecAdd<vector_type > compolCopy(&vec, &collectedVec);
    com.send_data(agglomeratedMaster, compolCopy);
    com.communicate();
  }
 
  if(type == PST_ADDITIVE)
  {
    UG_THROW("ONLY CONSISTENT!");
    // das problem ist, dass der vektor noch slave-interfaces nach "au�en" haben kann,
    // diese werden dann f�lschlicherweise auch 0 gesetzt.
 
    //vec.set_storage_type(PST_ADDITIVE);
 
  }
  else if(type == PST_CONSISTENT) { }
  else { UG_THROW("storage type " << type << "unsupported."); }
 
  }UG_CATCH_THROW(__FUNCTION__ << " failed");
}
void BroadcastVectorFromOne(IndexLayout &agglomeratedMaster, IndexLayout &agglomeratedSlave, {…}
 
} // namespace ug
 
#endif /* __H__LIB_ALGEBRA__COLLECT_MATRIX_H_ */