file_io_ugx.h

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/*
 * Copyright (c) 2010-2015:  G-CSC, Goethe University Frankfurt
 * Author: Sebastian Reiter
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__LIB_GRID__FILE_IO_UGX__
#define __H__LIB_GRID__FILE_IO_UGX__
 
 
#include <errno.h>
#include <cstdlib>
#include <iostream>
#include <vector>
#include <utility>
#include "common/parser/rapidxml/rapidxml.hpp"
#include "lib_grid/grid/grid.h"
#include "lib_grid/multi_grid.h"
#include "lib_grid/tools/subset_handler_interface.h"
#include "lib_grid/tools/selector_interface.h"
#include "lib_grid/common_attachments.h"
#include "lib_grid/grid_objects/grid_objects.h"
#include "lib_grid/refinement/projectors/refinement_projector.h"
#include "common/math/misc/shapes.h"  // AABox
 
namespace ug
{
 
class ProjectionHandler;
 
 
template <class TAPosition>
bool SaveGridToUGX(Grid& grid, ISubsetHandler& sh,
           const char* filename, TAPosition& aPos);
 
 
bool SaveGridToUGX(Grid& grid, ISubsetHandler& sh,
           const char* filename);
 
 
template <class TAPosition>
bool LoadGridFromUGX(Grid& grid, ISubsetHandler& sh,
          const char* filename, APosition& aPos);
 
 
bool LoadGridFromUGX(Grid& grid, ISubsetHandler& sh,
          const char* filename);
          
          
 
 
class GridWriterUGX
{
  public:
    GridWriterUGX();
    virtual ~GridWriterUGX();
 
    template <class TPositionAttachment>
    bool add_grid(Grid& grid, const char* name,
            TPositionAttachment& aPos);
 
//    template <class TPositionAttachment>
//    void add_grid(MultiGrid& mg, const char* name,
//            TPositionAttachment& aPos);
 
    void add_subset_handler(ISubsetHandler& sh, const char* name,
                size_t refGridIndex);
 
    void add_selector(ISelector& sel, const char* name,
              size_t refGridIndex);
 
    void add_projection_handler(ProjectionHandler& ph, const char* name,
                  size_t refGridIndex);
 
    template <class TElem, class TAttachment>
    void add_attachment(TAttachment attachment,
              const char* name,
              size_t refGridIndex);
 
    virtual bool write_to_stream(std::ostream& out);
 
    bool write_to_file(const char* filename);
 
  protected:
    typedef Grid::VertexAttachmentAccessor<AInt> AAVrtIndex;
    typedef Grid::EdgeAttachmentAccessor<AInt> AAEdgeIndex;
    typedef Grid::FaceAttachmentAccessor<AInt> AAFaceIndex;
    typedef Grid::VolumeAttachmentAccessor<AInt> AAVolIndex;
 
  protected:
    void init_grid_attachments(Grid& grid);
    
  //  VERTICES
    template <class TAAPos>
    rapidxml::xml_node<>*
    create_vertex_node(RegularVertexIterator vrtsBegin,
              RegularVertexIterator vrtsEnd,
              TAAPos& aaPos);
 
    template <class TAAPos>
    rapidxml::xml_node<>*
    create_constrained_vertex_node(ConstrainedVertexIterator vrtsBegin,
                    ConstrainedVertexIterator vrtsEnd,
                    TAAPos& aaPos,
                    AAEdgeIndex aaIndEDGE,
                    AAFaceIndex aaIndFACE);
            
                            
    void add_elements_to_node(rapidxml::xml_node<>* node,
                  Grid& grid);
 
  //  EDGES
    rapidxml::xml_node<>*
    create_edge_node(RegularEdgeIterator edgesBegin,
             RegularEdgeIterator edgesEnd,
             AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_constraining_edge_node(ConstrainingEdgeIterator edgesBegin,
                    ConstrainingEdgeIterator edgesEnd,
                    AAVrtIndex aaIndVRT);
                
    rapidxml::xml_node<>*
    create_constrained_edge_node(ConstrainedEdgeIterator edgesBegin,
                   ConstrainedEdgeIterator edgesEnd,
                   AAVrtIndex aaIndVRT,
                   AAEdgeIndex aaIndEDGE,
                   AAFaceIndex aaIndFACE);
                   
  //  FACES
    rapidxml::xml_node<>*
    create_triangle_node(TriangleIterator trisBegin,
               TriangleIterator trisEnd,
               AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_constraining_triangle_node(ConstrainingTriangleIterator trisBegin,
                      ConstrainingTriangleIterator trisEnd,
                      AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_constrained_triangle_node(ConstrainedTriangleIterator trisBegin,
                     ConstrainedTriangleIterator trisEnd,
                     AAVrtIndex aaIndVRT,
                     AAFaceIndex aaIndFACE);
               
    rapidxml::xml_node<>*
    create_quadrilateral_node(QuadrilateralIterator quadsBegin,
                  QuadrilateralIterator quadsEnd,
                  AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_constraining_quadrilateral_node(ConstrainingQuadrilateralIterator quadsBegin,
                         ConstrainingQuadrilateralIterator quadsEnd,
                           AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_constrained_quadrilateral_node(ConstrainedQuadrilateralIterator quadsBegin,
                        ConstrainedQuadrilateralIterator quadsEnd,
                        AAVrtIndex aaIndVRT,
                        AAFaceIndex aaIndFACE);
  //  VOLUMES
    rapidxml::xml_node<>*
    create_tetrahedron_node(TetrahedronIterator tetsBegin,
                  TetrahedronIterator tetsEnd,
                  AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_hexahedron_node(HexahedronIterator hexasBegin,
                  HexahedronIterator hexasEnd,
                  AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_prism_node(PrismIterator prismsBegin,
              PrismIterator prismsEnd,
              AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_pyramid_node(PyramidIterator pyrasBegin,
              PyramidIterator pyrasEnd,
              AAVrtIndex aaIndVRT);
 
    rapidxml::xml_node<>*
    create_octahedron_node(OctahedronIterator octsBegin,
                OctahedronIterator octsEnd,
                AAVrtIndex aaIndVRT);
 
    void add_subset_attributes(rapidxml::xml_node<>* targetNode,
                   ISubsetHandler& sh, size_t subsetIndex);
 
    template <class TGeomObj>
    rapidxml::xml_node<>*
    create_subset_element_node(const char* name,
                   const ISubsetHandler& sh,
                   size_t si);
 
    template <class TGeomObj>
    rapidxml::xml_node<>*
    create_selector_element_node(const char* name, const ISelector& sel);
 
 
    rapidxml::xml_node<>*
    create_projector_node(RefinementProjector& proj, const char* nodeName);
 
    template <class TElem>
    void process_global_attachments(Grid& grid, rapidxml::xml_node<>* gridNode);
 
    template <class TElem>
    const char* attachment_node_name();
 
  protected:
 
    struct Entry{
      Entry() {}
      Entry(Grid* g, rapidxml::xml_node<>* n) :
        grid(g), node(n)  {}
      Entry(Grid* g, rapidxml::xml_node<>* n) : {…}
 
      Grid* grid;
      std::vector<const ISubsetHandler*> subsetHandlers;
      rapidxml::xml_node<>* node;
    };
    struct Entry {…};
 
    rapidxml::xml_document<> m_doc;
 
    std::vector<Entry> m_vEntries;
 
    AInt  m_aInt;
};
class GridWriterUGX {…};
 
 
 
class GridReaderUGX
{
  public:
    GridReaderUGX();
    virtual ~GridReaderUGX();
 
    bool parse_file(const char* filename);
 
    inline size_t num_grids() const {return m_entries.size();}
 
 
    template <class TPositionAttachment>
    bool grid(Grid& gridOut, size_t index,
            TPositionAttachment& aPos);
 
    const char* get_grid_name(size_t index) const;
 
    size_t num_subset_handlers(size_t refGridIndex) const;
 
    const char* get_subset_handler_name(size_t refGridIndex,
                      size_t subsetHandlerIndex) const;
 
    bool subset_handler(ISubsetHandler& shOut,
                size_t subsetHandlerIndex,
                size_t refGridIndex);
 
    size_t num_selectors(size_t refGridIndex) const;
 
    const char* get_selector_name(size_t refGridIndex, size_t selectorIndex) const;
 
    bool selector(ISelector& selOut, size_t selectorIndex, size_t refGridIndex);
 
    size_t num_projection_handlers(size_t refGridIndex) const;
 
    const char* get_projection_handler_name(size_t refGridIndex, size_t phIndex) const;
 
    size_t get_projection_handler_subset_handler_index(size_t phIndex, size_t refGridIndex);
 
    bool projection_handler(ProjectionHandler& phOut, size_t phIndex, size_t refGridIndex);
    
  protected:
    struct SubsetHandlerEntry
    {
      SubsetHandlerEntry(rapidxml::xml_node<>* n) : node(n), sh(NULL) {}
 
      rapidxml::xml_node<>*   node;
      ISubsetHandler*     sh;
    };
    struct SubsetHandlerEntry {…};
 
    struct SelectorEntry
    {
      SelectorEntry(rapidxml::xml_node<>* n) : node(n), sel(NULL) {}
 
      rapidxml::xml_node<>*   node;
      ISelector*        sel;
    };
    struct SelectorEntry {…};
 
    struct GridEntry
    {
      GridEntry(rapidxml::xml_node<>* n) : node(n), grid(NULL), mg(NULL)  {}
 
      rapidxml::xml_node<>* node;
      Grid*     grid;
      MultiGrid*  mg;
      std::vector<SubsetHandlerEntry> subsetHandlerEntries;
      std::vector<SelectorEntry>    selectorEntries;
      std::vector<rapidxml::xml_node<>*>  projectionHandlerEntries;
      std::vector<Vertex*>    vertices;
      std::vector<Edge*>      edges;
      std::vector<Face*>        faces;
      std::vector<Volume*>      volumes;
    };
    struct GridEntry {…};
 
  protected:
 
    virtual bool new_document_parsed();
 
 
    template <class TAAPos>
    bool create_vertices(std::vector<Vertex*>& vrtsOut, Grid& grid,
              rapidxml::xml_node<>* vrtNode, TAAPos aaPos);
 
    template <class TAAPos>
    bool create_constrained_vertices(std::vector<Vertex*>& vrtsOut,
              std::vector<std::pair<int, int> >& constrainingObjsOut,
              Grid& grid, rapidxml::xml_node<>* vrtNode, TAAPos aaPos);
              
    bool create_edges(std::vector<Edge*>& edgesOut,
              Grid& grid, rapidxml::xml_node<>* node,
              std::vector<Vertex*>& vrts);
 
    bool create_constraining_edges(std::vector<Edge*>& edgesOut,
              Grid& grid, rapidxml::xml_node<>* node,
              std::vector<Vertex*>& vrts);
 
    bool create_constrained_edges(std::vector<Edge*>& edgesOut,
              std::vector<std::pair<int, int> >& constrainingObjsOut,
              Grid& grid, rapidxml::xml_node<>* node,
              std::vector<Vertex*>& vrts);
 
    bool create_triangles(std::vector<Face*>& facesOut,
                Grid& grid, rapidxml::xml_node<>* node,
                std::vector<Vertex*>& vrts);
 
    bool create_constraining_triangles(std::vector<Face*>& facesOut,
                Grid& grid, rapidxml::xml_node<>* node,
                std::vector<Vertex*>& vrts);
 
    bool create_constrained_triangles(std::vector<Face*>& facesOut,
                std::vector<std::pair<int, int> >& constrainingObjsOut,
                Grid& grid, rapidxml::xml_node<>* node,
                std::vector<Vertex*>& vrts);
                
    bool create_quadrilaterals(std::vector<Face*>& facesOut,
                   Grid& grid, rapidxml::xml_node<>* node,
                   std::vector<Vertex*>& vrts);
 
    bool create_constraining_quadrilaterals(std::vector<Face*>& facesOut,
                Grid& grid, rapidxml::xml_node<>* node,
                std::vector<Vertex*>& vrts);
 
    bool create_constrained_quadrilaterals(std::vector<Face*>& facesOut,
                std::vector<std::pair<int, int> >& constrainingObjsOut,
                Grid& grid, rapidxml::xml_node<>* node,
                std::vector<Vertex*>& vrts);
                
    bool create_tetrahedrons(std::vector<Volume*>& volsOut,
                 Grid& grid, rapidxml::xml_node<>* node,
                 std::vector<Vertex*>& vrts);
 
    bool create_hexahedrons(std::vector<Volume*>& volsOut,
                Grid& grid, rapidxml::xml_node<>* node,
                std::vector<Vertex*>& vrts);
 
    bool create_prisms(std::vector<Volume*>& volsOut,
              Grid& grid, rapidxml::xml_node<>* node,
              std::vector<Vertex*>& vrts);
 
    bool create_pyramids(std::vector<Volume*>& volsOut,
              Grid& grid, rapidxml::xml_node<>* node,
              std::vector<Vertex*>& vrts);
 
    bool create_octahedrons(std::vector<Volume*>& volsOut,
                Grid& grid, rapidxml::xml_node<>* node,
                std::vector<Vertex*>& vrts);
 
    template <class TGeomObj>
    bool read_subset_handler_elements(ISubsetHandler& shOut,
                     const char* elemNodeName,
                     rapidxml::xml_node<>* subsetNode,
                     int subsetIndex,
                     std::vector<TGeomObj*>& vElems);
 
    template <class TGeomObj>
    bool read_selector_elements(ISelector& selOut,
                   const char* elemNodeName,
                   rapidxml::xml_node<>* selNode,
                   std::vector<TGeomObj*>& vElems);
 
    template <class TElem>
    bool read_attachment(Grid& grid, rapidxml::xml_node<>* node);
 
    SPRefinementProjector
    read_projector(rapidxml::xml_node<>* projNode);
 
  protected:
    rapidxml::xml_document<> m_doc;
 
    std::vector<GridEntry>  m_entries;
};
class GridReaderUGX {…};
 
 
class UGXFileInfo{
  public:
    UGXFileInfo();
 
    bool parse_file(const char* filename);
 
    size_t num_grids() const;
    size_t num_subset_handlers(size_t gridInd) const;
    size_t num_subsets(size_t gridInd, size_t shInd) const;
 
    std::string grid_name(size_t gridInd) const;
    std::string subset_handler_name(size_t gridInd, size_t shInd) const;
    std::string subset_name(size_t gridInd, size_t shInd, size_t subsetInd) const;
 
    bool grid_has_vertices(size_t gridInd) const;
    bool grid_has_edges(size_t gridInd) const;
    bool grid_has_faces(size_t gridInd) const;
    bool grid_has_volumes(size_t gridInd) const;
 
 
    size_t physical_grid_dimension(size_t gridInd) const;
 
 
    size_t topological_grid_dimension(size_t gridInd) const;
 
 
    size_t grid_world_dimension(size_t gridInd) const;
 
 
  private:
    struct SubsetInfo{
      std::string m_name;
    };
    struct SubsetInfo {…};
 
    struct SubsetHandlerInfo{
      std::string m_name;
      std::vector<SubsetInfo> m_subsets;
    };
    struct SubsetHandlerInfo {…};
 
    struct GridInfo{
      std::string m_name;
      bool  m_hasVertices;
      bool  m_hasEdges;
      bool  m_hasFaces;
      bool  m_hasVolumes;
      std::vector<SubsetHandlerInfo>  m_subsetHandlers;
      vector3 m_extension;
    };
    struct GridInfo {…};
 
    std::vector<GridInfo> m_grids;
    bool          m_fileParsed;
 
 
  private:
    std::string node_name(rapidxml::xml_node<>* n) const;
 
    void check_file_parsed() const;
 
 
    const GridInfo& grid_info(size_t index) const;
 
 
    const SubsetHandlerInfo& subset_handler_info(size_t gridInd, size_t shInd) const;
 
 
    const SubsetInfo& subset_info(size_t gridInd, size_t shInd, size_t subsetInd) const;
 
 
    bool calculate_vertex_node_bbox(rapidxml::xml_node<>* vrtNode, AABox<vector3>& bb) const;
};
class UGXFileInfo {…};
 
}// end of namespace
 
//  include implementation
#include "file_io_ugx_impl.hpp"
 
#endif