file_io_ugx_impl.hpp

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/*
 * Copyright (c) 2010-2015:  G-CSC, Goethe University Frankfurt
 * Author: Sebastian Reiter
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__LIB_GRID__FILE_IO_UGX_IMPL__
#define __H__LIB_GRID__FILE_IO_UGX_IMPL__
 
#include <sstream>
#include <cstring>
#include "lib_grid/algorithms/debug_util.h"
#include "lib_grid/global_attachments.h"
#include "lib_grid/refinement/projectors/projection_handler.h"
 
namespace ug
{
 
template <class TAPosition>
bool SaveGridToUGX(Grid& grid, ISubsetHandler& sh, const char* filename,
           TAPosition& aPos)
{
  GridWriterUGX ugxWriter;
  ugxWriter.add_grid(grid, "defGrid", aPos);
  ugxWriter.add_subset_handler(sh, "defSH", 0);
 
  return ugxWriter.write_to_file(filename);
};
bool SaveGridToUGX(Grid& grid, ISubsetHandler& sh, const char* filename, {…}
 
template <class TAPosition>
bool LoadGridFromUGX(Grid& grid, SPProjectionHandler& ph, size_t& num_ph, ISubsetHandler& sh, std::vector<std::string> additionalSHNames,
            std::vector<SmartPtr<ISubsetHandler>> ash, const char* filename, TAPosition& aPos)
{
  GridReaderUGX ugxReader;
  if(!ugxReader.parse_file(filename)){
    UG_LOG("ERROR in LoadGridFromUGX: File not found: " << filename << std::endl);
    return false;
  }
  
  if(ugxReader.num_grids() < 1){
    UG_LOG("ERROR in LoadGridFromUGX: File contains no grid.\n");
    return false;
  }
 
  ugxReader.grid(grid, 0, aPos);
 
  if(ugxReader.num_subset_handlers(0) > 0)
    ugxReader.subset_handler(sh, 0, 0);
  
  for(size_t i_name = 0; i_name < additionalSHNames.size(); ++i_name){
    std::string shName = additionalSHNames[i_name];
    for(size_t i_sh = 0; i_sh < ugxReader.num_subset_handlers(0); ++i_sh){
      if(shName == ugxReader.get_subset_handler_name(0, i_sh)){
        ugxReader.subset_handler(*ash[i_name], i_sh, 0);
      }
    }
  }
 
  if((num_ph = ugxReader.num_projection_handlers(0)) != 0){
    ugxReader.projection_handler(*ph, 0, 0);
    size_t shIndex = ugxReader.get_projection_handler_subset_handler_index(0, 0);
    std::string shName2;
    shName2 = std::string(ugxReader.get_subset_handler_name(0, shIndex));
 
    if (shIndex > 0)
    {
      for(size_t i_name = 0; i_name < additionalSHNames.size(); ++i_name)
        if(shName2==additionalSHNames[i_name])
        {
          try {ph->set_subset_handler(ash[i_name]);}
          UG_CATCH_THROW("Additional subset handler '"<< shName2 << "' has not been added to the domain.\n"
                  "Do so by using Domain::create_additional_subset_handler(std::string name).");
        }
    }
  }
 
  return true;
}
bool LoadGridFromUGX(Grid& grid, SPProjectionHandler& ph, size_t& num_ph, ISubsetHandler& sh, std::vector<std::string> additionalSHNames, {…}
 
template <class TAPosition>
bool LoadGridFromUGX(Grid& grid, ISubsetHandler& sh, const char* filename,
           TAPosition& aPos)
{
  GridReaderUGX ugxReader;
  if(!ugxReader.parse_file(filename)){
    UG_LOG("ERROR in LoadGridFromUGX: File not found: " << filename << std::endl);
    return false;
  }
 
  if(ugxReader.num_grids() < 1){
    UG_LOG("ERROR in LoadGridFromUGX: File contains no grid.\n");
    return false;
  }
 
  ugxReader.grid(grid, 0, aPos);
 
  if(ugxReader.num_subset_handlers(0) > 0)
    ugxReader.subset_handler(sh, 0, 0);
 
  return true;
}
bool LoadGridFromUGX(Grid& grid, ISubsetHandler& sh, const char* filename, {…}
 
 
template <class TPositionAttachment>
bool GridWriterUGX::
add_grid(Grid& grid, const char* name,
     TPositionAttachment& aPos)
{
  using namespace rapidxml;
  using namespace std;
//  access node data
  if(!grid.has_vertex_attachment(aPos)){
    UG_LOG("  position attachment missing in grid " << name << endl);
    return false;
  }
 
  Grid::VertexAttachmentAccessor<TPositionAttachment> aaPos(grid, aPos);
 
//  create a new grid-node
  xml_node<>* gridNode = m_doc.allocate_node(node_element, "grid");
  gridNode->append_attribute(m_doc.allocate_attribute("name", name));
 
//  store the grid and the node in an entry
  m_vEntries.push_back(Entry(&grid, gridNode));
 
//  append it to the document
  m_doc.append_node(gridNode);
 
//  initialize the grids attachments
  init_grid_attachments(grid);
  
//  access indices
  Grid::EdgeAttachmentAccessor<AInt> aaIndEDGE(grid, m_aInt);
  Grid::FaceAttachmentAccessor<AInt> aaIndFACE(grid, m_aInt);
  
//  write vertices
  if(grid.num<RegularVertex>() > 0)
    gridNode->append_node(create_vertex_node(grid.begin<RegularVertex>(),
                    grid.end<RegularVertex>(), aaPos));
 
//  write constrained vertices
  if(grid.num<ConstrainedVertex>() > 0)
    gridNode->append_node(create_constrained_vertex_node(
                    grid.begin<ConstrainedVertex>(),
                    grid.end<ConstrainedVertex>(),
                    aaPos, aaIndEDGE, aaIndFACE));
 
//  add the remaining grid elements to the nodes
  add_elements_to_node(gridNode, grid);
 
  process_global_attachments<Vertex>(grid, gridNode);
  process_global_attachments<Edge>(grid, gridNode);
  process_global_attachments<Face>(grid, gridNode);
  process_global_attachments<Volume>(grid, gridNode);
 
  return true;
}
bool GridWriterUGX:: {…}
 
//template <class TPositionAttachment>
//void GridWriterUGX::
//add_grid(MultiGrid& mg, const char* name,
//     TPositionAttachment& aPos)
//{
//}
 
template <class TElem>
const char* GridWriterUGX::
attachment_node_name()
{
  static const char* attachmentNodeNames[4] = {"vertex_attachment",
                         "edge_attachment",
                         "face_attachment",
                         "volume_attachment"};
  return attachmentNodeNames[TElem::BASE_OBJECT_ID];
}
const char* GridWriterUGX:: {…}
 
 
template <class TElem, class TAttachment>
void GridWriterUGX::
add_attachment(TAttachment attachment,
         const char* name,
         size_t refGridIndex)
{
  using namespace rapidxml;
  using namespace std;
 
  UG_COND_THROW(refGridIndex >= m_vEntries.size(),
          "Invalid refGridIndex: " << refGridIndex
          << ", but only " << m_vEntries.size() << " grids available.");
 
  Grid& grid = *m_vEntries[refGridIndex].grid;
  stringstream ss;
 
  if(!grid.has_attachment<TElem>(attachment))
    return;
 
  Grid::AttachmentAccessor<TElem, TAttachment> aaVal(grid, attachment);
 
  const typename Grid::traits<TElem>::iterator iterEnd = grid.end<TElem>();
  for(typename Grid::traits<TElem>::iterator iter = grid.begin<TElem>();
    iter != iterEnd;)
  {
    attachment_io_traits<TAttachment>::write_value(ss, aaVal[*iter]);
    UG_COND_THROW(!ss, "Failed to write attachment entry.\n");
    ++iter;
    if(iter != iterEnd)
      ss << " ";
  }
 
//  create the node
  xml_node<>* node = m_doc.allocate_node(
                node_element,
                attachment_node_name<TElem>(),
                m_doc.allocate_string(ss.str().c_str()));
 
//  attributes  
  node->append_attribute(
    m_doc.allocate_attribute(
      "name",
      m_doc.allocate_string(name)));
 
  node->append_attribute(
    m_doc.allocate_attribute(
      "type",
      m_doc.allocate_string(
        attachment_info_traits<TAttachment>::type_name().c_str())));
 
//todo: only default pass-on is stored, not the actual used one!
  node->append_attribute(
    m_doc.allocate_attribute(
      "passOn",
      m_doc.allocate_string(mkstr(int(attachment.default_pass_on_behaviour())).c_str())));
 
  m_vEntries[refGridIndex].node->append_node(node);
}
void GridWriterUGX:: {…}
 
 
template <class TAAPos>
rapidxml::xml_node<>*
GridWriterUGX::
create_vertex_node(RegularVertexIterator vrtsBegin,
          RegularVertexIterator vrtsEnd,
          TAAPos& aaPos)
{
  using namespace rapidxml;
  using namespace std;
//  the number of coordinates
  const int numCoords = (int)TAAPos::ValueType::Size;
 
//  write the vertices to a temporary stream
  stringstream ss;
  ss.precision(18);
  for(RegularVertexIterator iter = vrtsBegin; iter != vrtsEnd; ++iter)
  {
    for(int i = 0; i < numCoords; ++i)
      ss << aaPos[*iter][i] << " ";
  }
 
//  create the node
  xml_node<>* node = NULL;
 
  if(ss.str().size() > 0){
  //  allocate a string and erase last character(' ')
    char* nodeData = m_doc.allocate_string(ss.str().c_str(), ss.str().size());
    nodeData[ss.str().size()-1] = 0;
  //  create a node with some data
    node = m_doc.allocate_node(node_element, "vertices", nodeData);
  }
  else{
  //  create an emtpy node
    node = m_doc.allocate_node(node_element, "vertices");
  }
 
  char* buff = m_doc.allocate_string(NULL, 10);
  snprintf(buff, 10, "%d", numCoords);
  node->append_attribute(m_doc.allocate_attribute("coords", buff));
 
//  return the node
  return node;
}
GridWriterUGX:: {…}
 
template <class TAAPos>
rapidxml::xml_node<>*
GridWriterUGX::
create_constrained_vertex_node(ConstrainedVertexIterator vrtsBegin,
                ConstrainedVertexIterator vrtsEnd,
                TAAPos& aaPos,
                AAEdgeIndex aaIndEDGE,
                AAFaceIndex aaIndFACE)
{
  using namespace rapidxml;
  using namespace std;
//  the number of coordinates
  const int numCoords = (int)TAAPos::ValueType::Size;
 
//  write the vertices to a temporary stream
  stringstream ss;
  ss.precision(18);
  for(ConstrainedVertexIterator iter = vrtsBegin; iter != vrtsEnd; ++iter)
  {
    for(int i = 0; i < numCoords; ++i)
      ss << aaPos[*iter][i] << " ";
      
  //  write index and local coordinate of associated constraining element
  //  codes:  -1: no constraining element
  //      0: vertex. index follows (not yet supported)
  //      1: edge. index and 1 local coordinate follow.
  //      2: face. index and 2 local coordinates follow.
  //      3: volume. index and 3 local coordinates follow. (not yet supported)
    Edge* ce = dynamic_cast<Edge*>((*iter)->get_constraining_object());
    Face* cf = dynamic_cast<Face*>((*iter)->get_constraining_object());
    if(ce)
      ss << "1 " << aaIndEDGE[ce] << " " << (*iter)->get_local_coordinate_1() << " ";
    else if(cf)
      ss << "2 " << aaIndFACE[cf] << " " << (*iter)->get_local_coordinate_1()
         << " " << (*iter)->get_local_coordinate_2() << " ";
    else
      ss << "-1 ";
  }
 
//  create the node
  xml_node<>* node = NULL;
 
  if(ss.str().size() > 0){
  //  allocate a string and erase last character(' ')
    char* nodeData = m_doc.allocate_string(ss.str().c_str(), ss.str().size());
    nodeData[ss.str().size()-1] = 0;
  //  create a node with some data
    node = m_doc.allocate_node(node_element, "constrained_vertices", nodeData);
  }
  else{
  //  create an emtpy node
    node = m_doc.allocate_node(node_element, "constrained_vertices");
  }
 
  char* buff = m_doc.allocate_string(NULL, 10);
  snprintf(buff, 10, "%d", numCoords);
  node->append_attribute(m_doc.allocate_attribute("coords", buff));
 
//  return the node
  return node;
}
GridWriterUGX:: {…}
 
 
template <class TElem>
void GridWriterUGX::
process_global_attachments(Grid& grid, rapidxml::xml_node<>* gridNode)
{
  using namespace std;
  using namespace rapidxml;
  const vector<string>& attachmentNames = GlobalAttachments::declared_attachment_names();
 
  for(size_t ia = 0; ia < attachmentNames.size(); ++ia){
    const std::string& name = attachmentNames[ia];
    if(!GlobalAttachments::is_attached<TElem>(grid, name))
      continue;
 
    stringstream ss;
    GlobalAttachments::write_attachment_values<TElem>(ss, grid, name);
 
  //  create the node
    xml_node<>* node = m_doc.allocate_node(
                  node_element,
                  attachment_node_name<TElem>(),
                  m_doc.allocate_string(ss.str().c_str()));
 
  //  attributes  
    node->append_attribute(
      m_doc.allocate_attribute(
        "name",
        m_doc.allocate_string(name.c_str())));
 
    node->append_attribute(
      m_doc.allocate_attribute(
        "type",
        m_doc.allocate_string(
          GlobalAttachments::type_name(name))));
 
    node->append_attribute(
      m_doc.allocate_attribute(
        "passOn",
        m_doc.allocate_string(mkstr(int(
          GlobalAttachments::attachment_pass_on_behaviour(name))).c_str())));
 
    node->append_attribute(
      m_doc.allocate_attribute(
        "global",
        m_doc.allocate_string("1")));
 
    gridNode->append_node(node);
  }
}
void GridWriterUGX:: {…}
 
 
//  implementation of GridReaderUGX
template <class TPositionAttachment>
bool GridReaderUGX::
grid(Grid& gridOut, size_t index,
      TPositionAttachment& aPos)
{
  using namespace rapidxml;
  using namespace std;
 
//  make sure that a node at the given index exists
  if(num_grids() <= index){
    UG_LOG("  GridReaderUGX::read: bad grid index!\n");
    return false;
  }
 
  Grid& grid = gridOut;
 
//  Since we have to create all elements in the correct order and
//  since we have to make sure that no elements are created in between,
//  we'll first disable all grid-options and reenable them later on
  uint gridopts = grid.get_options();
  grid.set_options(GRIDOPT_NONE);
 
//  access node data
  if(!grid.has_vertex_attachment(aPos)){
    grid.attach_to_vertices(aPos);
  }
 
  Grid::VertexAttachmentAccessor<TPositionAttachment> aaPos(grid, aPos);
 
//  store the grid in the grid-vector and assign indices to the vertices
  m_entries[index].grid = &grid;
 
//  get the grid-node and the vertex-vector
  xml_node<>* gridNode = m_entries[index].node;
  vector<Vertex*>& vertices = m_entries[index].vertices;
  vector<Edge*>& edges = m_entries[index].edges;
  vector<Face*>& faces = m_entries[index].faces;
  vector<Volume*>& volumes = m_entries[index].volumes;
 
//  we'll record constraining objects for constrained-vertices and constrained-edges
  std::vector<std::pair<int, int> > constrainingObjsVRT;
  std::vector<std::pair<int, int> > constrainingObjsEDGE;
  std::vector<std::pair<int, int> > constrainingObjsTRI;
  std::vector<std::pair<int, int> > constrainingObjsQUAD;
  
//  iterate through the nodes in the grid and create the entries
  xml_node<>* curNode = gridNode->first_node();
  for(;curNode; curNode = curNode->next_sibling()){
    bool bSuccess = true;
    const char* name = curNode->name();
    if(strcmp(name, "vertices") == 0)
      bSuccess = create_vertices(vertices, grid, curNode, aaPos);
    else if(strcmp(name, "constrained_vertices") == 0)
      bSuccess = create_constrained_vertices(vertices, constrainingObjsVRT,
                           grid, curNode, aaPos);
    else if(strcmp(name, "edges") == 0)
      bSuccess = create_edges(edges, grid, curNode, vertices);
    else if(strcmp(name, "constraining_edges") == 0)
      bSuccess = create_constraining_edges(edges, grid, curNode, vertices);
    else if(strcmp(name, "constrained_edges") == 0)
      bSuccess = create_constrained_edges(edges, constrainingObjsEDGE,
                        grid, curNode, vertices);
    else if(strcmp(name, "triangles") == 0)
      bSuccess = create_triangles(faces, grid, curNode, vertices);
    else if(strcmp(name, "constraining_triangles") == 0)
      bSuccess = create_constraining_triangles(faces, grid, curNode, vertices);
    else if(strcmp(name, "constrained_triangles") == 0)
      bSuccess = create_constrained_triangles(faces, constrainingObjsTRI,
                        grid, curNode, vertices);
    else if(strcmp(name, "quadrilaterals") == 0)
      bSuccess = create_quadrilaterals(faces, grid, curNode, vertices);
    else if(strcmp(name, "constraining_quadrilaterals") == 0)
      bSuccess = create_constraining_quadrilaterals(faces, grid, curNode, vertices);
    else if(strcmp(name, "constrained_quadrilaterals") == 0)
      bSuccess = create_constrained_quadrilaterals(faces, constrainingObjsQUAD,
                        grid, curNode, vertices);
    else if(strcmp(name, "tetrahedrons") == 0)
      bSuccess = create_tetrahedrons(volumes, grid, curNode, vertices);
    else if(strcmp(name, "hexahedrons") == 0)
      bSuccess = create_hexahedrons(volumes, grid, curNode, vertices);
    else if(strcmp(name, "prisms") == 0)
      bSuccess = create_prisms(volumes, grid, curNode, vertices);
    else if(strcmp(name, "pyramids") == 0)
      bSuccess = create_pyramids(volumes, grid, curNode, vertices);
    else if(strcmp(name, "octahedrons") == 0)
      bSuccess = create_octahedrons(volumes, grid, curNode, vertices);
 
    else if(strcmp(name, "vertex_attachment") == 0)
      bSuccess = read_attachment<Vertex>(grid, curNode);
    else if(strcmp(name, "edge_attachment") == 0)
      bSuccess = read_attachment<Edge>(grid, curNode);
    else if(strcmp(name, "face_attachment") == 0)
      bSuccess = read_attachment<Face>(grid, curNode);
    else if(strcmp(name, "volume_attachment") == 0)
      bSuccess = read_attachment<Volume>(grid, curNode);
 
 
    if(!bSuccess){
      grid.set_options(gridopts);
      return false;
    }
  }
  
//  resolve constrained object relations
  if(!constrainingObjsVRT.empty()){
    //UG_LOG("num-edges: " << edges.size() << std::endl);
  //  iterate over the pairs.
  //  at the same time we'll iterate over the constrained vertices since
  //  they are synchronized.
    ConstrainedVertexIterator hvIter = grid.begin<ConstrainedVertex>();
    for(std::vector<std::pair<int, int> >::iterator iter = constrainingObjsVRT.begin();
      iter != constrainingObjsVRT.end(); ++iter, ++hvIter)
    {
      ConstrainedVertex* hv = *hvIter;
      
      switch(iter->first){
        case 1: // constraining object is an edge
        {
        //  make sure that the index is valid
          if(iter->second >= 0 && iter->second < (int)edges.size()){
          //  get the edge
            ConstrainingEdge* edge = dynamic_cast<ConstrainingEdge*>(edges[iter->second]);
            if(edge){
              hv->set_constraining_object(edge);
              edge->add_constrained_object(hv);
            }
            else{
              UG_LOG("WARNING: Type-ID / type mismatch. Ignoring edge " << iter->second << ".\n");
            }
          }
          else{
            UG_LOG("ERROR in GridReaderUGX: Bad edge index in constrained vertex: " << iter->second << "\n");
          }
        }break;
        
        case 2: // constraining object is an face
        {
        //  make sure that the index is valid
          if(iter->second >= 0 && iter->second < (int)faces.size()){
          //  get the edge
            ConstrainingFace* face = dynamic_cast<ConstrainingFace*>(faces[iter->second]);
            if(face){
              hv->set_constraining_object(face);
              face->add_constrained_object(hv);
            }
            else{
              UG_LOG("WARNING in GridReaderUGX: Type-ID / type mismatch. Ignoring face " << iter->second << ".\n");
            }
          }
          else{
            UG_LOG("ERROR in GridReaderUGX: Bad face index in constrained vertex: " << iter->second << "\n");
          }
        }break;
        
        default:
        {
//          UG_LOG("WARNING in GridReaderUGX: unsupported type-id of constraining vertex"
//              << " at " << GetGridObjectCenter(grid, hv) << "\n");
          break;
        }
      }
    }
  }
 
  if(!constrainingObjsEDGE.empty()){
  //  iterate over the pairs.
  //  at the same time we'll iterate over the constrained vertices since
  //  they are synchronized.
    ConstrainedEdgeIterator ceIter = grid.begin<ConstrainedEdge>();
    for(std::vector<std::pair<int, int> >::iterator iter = constrainingObjsEDGE.begin();
      iter != constrainingObjsEDGE.end(); ++iter, ++ceIter)
    {
      ConstrainedEdge* ce = *ceIter;
      
      switch(iter->first){
        case 1: // constraining object is an edge
        {
        //  make sure that the index is valid
          if(iter->second >= 0 && iter->second < (int)edges.size()){
          //  get the edge
            ConstrainingEdge* edge = dynamic_cast<ConstrainingEdge*>(edges[iter->second]);
            if(edge){
              ce->set_constraining_object(edge);
              edge->add_constrained_object(ce);
            }
            else{
              UG_LOG("WARNING in GridReaderUGX: Type-ID / type mismatch. Ignoring edge " << iter->second << ".\n");
            }
          }
          else{
            UG_LOG("ERROR in GridReaderUGX: Bad edge index in constrained edge.\n");
          }
        }break;
        case 2: // constraining object is an face
        {
        //  make sure that the index is valid
          if(iter->second >= 0 && iter->second < (int)faces.size()){
          //  get the edge
            ConstrainingFace* face = dynamic_cast<ConstrainingFace*>(faces[iter->second]);
            if(face){
              ce->set_constraining_object(face);
              face->add_constrained_object(ce);
            }
            else{
              UG_LOG("WARNING in GridReaderUGX: Type-ID / type mismatch. Ignoring face " << iter->second << ".\n");
            }
          }
          else{
            UG_LOG("ERROR in GridReaderUGX: Bad face index in constrained edge: " << iter->second << "\n");
          }
        }break;
        
        default:
        {
//          UG_LOG("WARNING in GridReaderUGX: unsupported type-id of constraining edge"
//              << " at " << GetGridObjectCenter(grid, ce) << "\n");
          break;
        }
      }
    }
  }
 
  if(!constrainingObjsTRI.empty()){
  //  iterate over the pairs.
  //  at the same time we'll iterate over the constrained vertices since
  //  they are synchronized.
    ConstrainedTriangleIterator cfIter = grid.begin<ConstrainedTriangle>();
    for(std::vector<std::pair<int, int> >::iterator iter = constrainingObjsTRI.begin();
      iter != constrainingObjsTRI.end(); ++iter, ++cfIter)
    {
      ConstrainedFace* cdf = *cfIter;
      
      switch(iter->first){
        case 2: // constraining object is an face
        {
        //  make sure that the index is valid
          if(iter->second >= 0 && iter->second < (int)faces.size()){
          //  get the edge
            ConstrainingFace* face = dynamic_cast<ConstrainingFace*>(faces[iter->second]);
            if(face){
              cdf->set_constraining_object(face);
              face->add_constrained_object(cdf);
            }
            else{
              UG_LOG("WARNING in GridReaderUGX: Type-ID / type mismatch. Ignoring face " << iter->second << ".\n");
            }
          }
          else{
            UG_LOG("ERROR in GridReaderUGX: Bad face index in constrained face: " << iter->second << "\n");
          }
        }break;
        
        default:
        {
//          UG_LOG("WARNING in GridReaderUGX: unsupported type-id of constraining triangle"
//              << " at " << GetGridObjectCenter(grid, cdf) << "\n");
          break;
        }
      }
    }
  }
 
  if(!constrainingObjsQUAD.empty()){
  //  iterate over the pairs.
  //  at the same time we'll iterate over the constrained vertices since
  //  they are synchronized.
    ConstrainedQuadrilateralIterator cfIter = grid.begin<ConstrainedQuadrilateral>();
    for(std::vector<std::pair<int, int> >::iterator iter = constrainingObjsQUAD.begin();
      iter != constrainingObjsQUAD.end(); ++iter, ++cfIter)
    {
      ConstrainedFace* cdf = *cfIter;
      
      switch(iter->first){
        case 2: // constraining object is an face
        {
        //  make sure that the index is valid
          if(iter->second >= 0 && iter->second < (int)faces.size()){
          //  get the edge
            ConstrainingFace* face = dynamic_cast<ConstrainingFace*>(faces[iter->second]);
            if(face){
              cdf->set_constraining_object(face);
              face->add_constrained_object(cdf);
            }
            else{
              UG_LOG("WARNING in GridReaderUGX: Type-ID / type mismatch. Ignoring face " << iter->second << ".\n");
            }
          }
          else{
            UG_LOG("ERROR in GridReaderUGX: Bad face index in constrained face: " << iter->second << "\n");
          }
        }break;
        
        default:
        {
//          UG_LOG("WARNING in GridReaderUGX: unsupported type-id of constraining quadrilateral"
//              << " at " << GetGridObjectCenter(grid, cdf) << "\n");
          break;
        }
      }
    }
  }
 
//  reenable the grids options.
  grid.set_options(gridopts);
 
  return true;
}
bool GridReaderUGX:: {…}
 
template <class TAAPos>
bool GridReaderUGX::
create_vertices(std::vector<Vertex*>& vrtsOut, Grid& grid,
        rapidxml::xml_node<>* vrtNode, TAAPos aaPos)
{
  using namespace rapidxml;
  using namespace std;
 
  int numSrcCoords = -1;
  xml_attribute<>* attrib = vrtNode->first_attribute("coords");
  if(attrib)
    numSrcCoords = atoi(attrib->value());
 
  int numDestCoords = (int)TAAPos::ValueType::Size;
 
  assert(numDestCoords > 0 && "bad position attachment type");
 
  if(numSrcCoords < 1 || numDestCoords < 1)
    return false;
 
//  create a buffer with which we can access the data
  string str(vrtNode->value(), vrtNode->value_size());
  stringstream ss(str, ios_base::in);
 
//  if numDestCoords == numSrcCoords parsing will be faster
  if(numSrcCoords == numDestCoords){
    while(!ss.eof()){
    //  read the data
      typename TAAPos::ValueType v;
 
      for(int i = 0; i < numSrcCoords; ++i)
        ss >> v[i];
 
    //  make sure that everything went right
      if(ss.fail())
        break;
 
    //  create a new vertex
      RegularVertex* vrt = *grid.create<RegularVertex>();
      vrtsOut.push_back(vrt);
 
    //  set the coordinates
      aaPos[vrt] = v;
    }
  }
  else{
  //  we have to be careful with reading.
  //  if numDestCoords < numSrcCoords we'll ignore some coords,
  //  in the other case we'll add some 0's.
    int minNumCoords = min(numSrcCoords, numDestCoords);
    typename TAAPos::ValueType::value_type dummy = 0;
 
    while(!ss.eof()){
    //  read the data
      typename TAAPos::ValueType v;
 
      int iMin;
      for(iMin = 0; iMin < minNumCoords; ++iMin)
        ss >> v[iMin];
 
    //  ignore unused entries in the input buffer
      for(int i = iMin; i < numSrcCoords; ++i)
        ss >> dummy;
 
    //  add 0's to the vector
      for(int i = iMin; i < numDestCoords; ++i)
        v[i] = 0;
 
    //  make sure that everything went right
      if(ss.fail())
        break;
 
    //  create a new vertex
      RegularVertex* vrt = *grid.create<RegularVertex>();
      vrtsOut.push_back(vrt);
 
    //  set the coordinates
      aaPos[vrt] = v;
    }
  }
 
  return true;
}
bool GridReaderUGX:: {…}
 
template <class TAAPos>
bool GridReaderUGX::
create_constrained_vertices(std::vector<Vertex*>& vrtsOut,
              std::vector<std::pair<int, int> >& constrainingObjsOut,
              Grid& grid, rapidxml::xml_node<>* vrtNode, TAAPos aaPos)
{
  using namespace rapidxml;
  using namespace std;
 
  int numSrcCoords = -1;
  xml_attribute<>* attrib = vrtNode->first_attribute("coords");
  if(attrib)
    numSrcCoords = atoi(attrib->value());
 
  int numDestCoords = (int)TAAPos::ValueType::Size;
 
  assert(numDestCoords > 0 && "bad position attachment type");
 
  if(numSrcCoords < 1 || numDestCoords < 1)
    return false;
 
//  create a buffer with which we can access the data
  string str(vrtNode->value(), vrtNode->value_size());
  stringstream ss(str, ios_base::in);
 
//  we have to be careful with reading.
//  if numDestCoords < numSrcCoords we'll ignore some coords,
//  in the other case we'll add some 0's.
  int minNumCoords = min(numSrcCoords, numDestCoords);
  typename TAAPos::ValueType::value_type dummy = 0;
 
//todo: speed could be improved, if dest and src position types have the same dimension
  while(!ss.eof()){
  //  read the data
    typename TAAPos::ValueType v;
 
    int iMin;
    for(iMin = 0; iMin < minNumCoords; ++iMin)
      ss >> v[iMin];
 
  //  ignore unused entries in the input buffer
    for(int i = iMin; i < numSrcCoords; ++i)
      ss >> dummy;
 
  //  add 0's to the vector
    for(int i = iMin; i < numDestCoords; ++i)
      v[i] = 0;
 
  //  now read the type of the constraining object and its index
    int conObjType = -1;
    int conObjIndex = -1;
    ss >> conObjType;
    
    if(conObjType != -1)
      ss >> conObjIndex;
 
  //  depending on the constrainings object type, we'll read local coordinates
    vector3 localCoords(0, 0, 0);
    switch(conObjType){
      case 1: // an edge. read one local coord
        ss >> localCoords.x();
        break;
      case 2: // a face. read two local coords
        ss >> localCoords.x() >> localCoords.y();
        break;
      default:
        break;
    }
        
  //  make sure that everything went right
    if(ss.fail())
      break;
 
  //  create a new vertex
    ConstrainedVertex* vrt = *grid.create<ConstrainedVertex>();
    vrtsOut.push_back(vrt);
 
  //  set the coordinates
    aaPos[vrt] = v;
    
  //  set local coordinates
    vrt->set_local_coordinates(localCoords.x(), localCoords.y());
    
  //  add the constraining object id and index to the list
    constrainingObjsOut.push_back(std::make_pair(conObjType, conObjIndex));
  }
 
  return true;
}
bool GridReaderUGX:: {…}
 
 
template <class TElem>
bool GridReaderUGX::
read_attachment(Grid& grid, rapidxml::xml_node<>* node)
{
  using namespace rapidxml;
  using namespace std;
 
  xml_attribute<>* attribName = node->first_attribute("name");
  UG_COND_THROW(!attribName, "Invalid attachment entry: No 'name' attribute was supplied!");
  string name = attribName->value();
 
  xml_attribute<>* attribType = node->first_attribute("type");
  UG_COND_THROW(!attribType, "Invalid attachment entry: No 'type' attribute was supplied!");
  string type = attribType->value();
 
  bool global = false;
  if (xml_attribute<>* attrib = node->first_attribute("global")){
    global = bool(atoi(attrib->value()));
  }
 
  bool passOn = false;
  if (xml_attribute<>* attrib = node->first_attribute("passOn")){
    passOn = bool(atoi(attrib->value()));
  }
  
  if(global && !GlobalAttachments::is_declared(name)){
    if(GlobalAttachments::type_is_registered(type)){
      GlobalAttachments::declare_attachment(name, type, passOn);
      // GlobalAttachments::mark_attachment_as_locally_declared(name);
    }
    else
      return true;
  }
 
  UG_COND_THROW(type.compare(GlobalAttachments::type_name(name)) != 0,
          "Attachment type mismatch. Expecting type: " << 
          GlobalAttachments::type_name(name)
          << ", but given type is: " << type);
 
  string str(node->value(), node->value_size());
  stringstream ss(str, ios_base::in);
  GlobalAttachments::read_attachment_values<TElem>(ss, grid, name);
 
  return true;
}
bool GridReaderUGX:: {…}
 
}// end of namespace
 
#endif