ntree_impl.hpp

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/*
 * Copyright (c) 2013-2015:  G-CSC, Goethe University Frankfurt
 * Author: Sebastian Reiter
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__UG__ntree_impl__
#define __H__UG__ntree_impl__
 
#include <cassert>
#include "ntree.h"
 
namespace ug{
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
ntree<tree_dim, world_dim, elem_t, common_data_t>::
ntree() :
  m_warningsEnabled (true)
{
  m_nodes.resize(1);
}
ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
clear_nodes()
{
  m_nodes.clear();
  m_nodes.resize(1);
  m_nodes[0].level = 0;
}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
clear()
{
  clear_nodes();
  m_entries.clear();
  m_numDelayedElements = 0;
}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
set_desc(const NTreeDesc& desc)
{
  m_desc = desc;
}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
const NTreeDesc& ntree<tree_dim, world_dim, elem_t, common_data_t>::
desc() const
{
  return m_desc;
}
const NTreeDesc& ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
set_common_data(const common_data_t& commonData)
{
  m_commonData = commonData;
}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
const common_data_t& ntree<tree_dim, world_dim, elem_t, common_data_t>::
common_data() const
{
  return m_commonData;
}
const common_data_t& ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
bool ntree<tree_dim, world_dim, elem_t, common_data_t>::
empty() const
{
  return size() == 0;
}
bool ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>::
size() const
{
  return m_entries.size() - m_numDelayedElements;
}
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>::
num_delayed_elements() const
{
  return m_numDelayedElements;
}
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
add_element(const elem_t& elem)
{
//  size_t entryInd = m_entries.size();
  m_entries.push_back(Entry(elem));
 
  ++m_numDelayedElements;
 
//todo  If we allowed for immediate on-the-fly insertion of elements, the following
//    code could serve as an implementation base. Note, that it is not yet complete.
//    One would have to update parent boxes if a child box changes etc.
//    It would make sense to also allow for the specification of a
//    minimum root-bounding-box, since else most insertions would trigger a rebalance.
//  {
//    vector_t center;
//    traits::calculate_center(center, elem, m_commonData);
//    size_t nodeInd = find_leaf_node(center);
//    if(nodeInd == s_invalidIndex){
//      ++m_numDelayedElements;
//      rebalance();
//    }
//    else{
//      Node& node = m_nodes[nodeInd];
//      add_entry_to_node(node, entryInd);
//      if(node.numEntries >= m_desc.splitThreshold)
//        split_leaf_node(nodeInd);
//      else{
//      //todo  the update could be much more efficient (simply unite the
//      //    old bounding box with the new element's bounding box.
//        update_loose_bounding_box(node);
//      }
//    }
//  }
}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
rebalance()
{
//  push all elements into the root node, calculate its bounding box
//  and call split_leaf_node if the element threshold is surpassed.
  clear_nodes();
  Node& root = m_nodes.back();
  if(!m_entries.empty()){
    root.firstEntryInd = 0;
    root.lastEntryInd = m_entries.size() - 1;
    root.numEntries = m_entries.size();
    for(size_t i = 0; i < m_entries.size(); ++i)
      m_entries[i].nextEntryInd = i+1;
    m_entries.back().nextEntryInd = s_invalidIndex;
 
  //  the tight bounding box and the loose bounding box of the root node
  //  should be the same.
    update_loose_bounding_box(root);
    root.tightBox = root.looseBox;
 
    if(root.numEntries >= m_desc.splitThreshold)
      split_leaf_node(0);
  }
}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
split_leaf_node(size_t nodeIndex)
{
 
  if(m_nodes[nodeIndex].numEntries <= 1)
    return;
 
  if(m_nodes[nodeIndex].level >= m_desc.maxDepth){
    if(m_warningsEnabled){
      UG_LOG("WARNING in ntree::split_leaf_node(): maximum tree depth "
        << m_desc.maxDepth << " reached. No further splits are performed for "
        " this node. Note that too many elements per node may lead to performance issues.\n"
        << "  Number of elements in this node: " << m_nodes[nodeIndex].numEntries << std::endl
        << "  Corner coordinates of this node: " << m_nodes[nodeIndex].tightBox << std::endl);
    }
    return;
  }
 
  if(m_nodes[nodeIndex].childNodeInd[0] != s_invalidIndex)
    return;
 
  const size_t firstChild = m_nodes.size();
  m_nodes.resize(firstChild + s_numChildren);
 
//  ATTENTION: Be careful not to resize m_nodes while using node, since this would invalidate the reference!
  Node& node = m_nodes[nodeIndex];
 
//  calculate center of mass and use the traits class to split the box of
//  the current node into 's_numChildren' child boxes. Each child box thereby
//  spanned by one of the corners of the original box and 'centerOfMass'.
  vector_t centerOfMass = calculate_center_of_mass(node);
  box_t childBoxes[s_numChildren];
  traits::split_box(childBoxes, node.tightBox, centerOfMass);
 
//  iterate over all entries in the current node and assign them to child nodes.
  size_t numEntriesAssigned = 0;
  for(size_t entryInd = node.firstEntryInd; entryInd != s_invalidIndex;){
    Entry& entry = m_entries[entryInd];
    size_t nextEntryInd = entry.nextEntryInd;
 
    size_t i_child;
    vector_t center;
    traits::calculate_center(center, entry.elem, m_commonData);
    for(i_child = 0; i_child < s_numChildren; ++i_child){
      if(traits::box_contains_point(childBoxes[i_child], center)){
        add_entry_to_node(m_nodes[firstChild + i_child], entryInd);
        ++numEntriesAssigned;
        break;
      }
    }
    /*-- For debugging only: --*
    if(i_child == s_numChildren){
      UG_LOG ("ERROR in ntree::split_leaf_node(): Element with center @ " << center
        << " does not belong to any child of the box " << node.tightBox << std::endl);
    }
     *--*/
 
    entryInd = nextEntryInd;
  }
 
//  all elements of the current box now should be assigned to child boxes.
//  we thus clear element lists and entry-count from the current node.
  UG_COND_THROW(numEntriesAssigned != node.numEntries, "Couldn't find a matching "
          "child node for some elements during split_leaf_node in "
          "ntree::split_leaf_node");
 
  node.firstEntryInd = node.lastEntryInd = s_invalidIndex;
  node.numEntries = 0;
 
  for(size_t i_child = 0; i_child < s_numChildren; ++i_child){
    node.childNodeInd[i_child] = firstChild + i_child;
    Node& childNode = m_nodes[firstChild + i_child];
    childNode.level = node.level + 1;
    childNode.tightBox = childBoxes[i_child];
    update_loose_bounding_box(childNode);
  }
 
//  since split_leaf_node resizes m_nodes and since this invalidates any references
//  to m_nodes, we perform the recursion in a last step
  for(size_t i_child = 0; i_child < s_numChildren; ++i_child){
    size_t childNodeInd = firstChild + i_child;
    if(m_nodes[childNodeInd].numEntries >= m_desc.splitThreshold)
      split_leaf_node(childNodeInd);
  }
}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>::
find_leaf_node(const vector_t& point, size_t curNode)
{
  Node& n = m_nodes[curNode];
  if(traits::box_contains_point(n.tightBox, point)){
    if(n.childNodeInd[0] != s_invalidIndex){
      for(size_t i = 0; i < s_numChildren; ++i){
        size_t result = find_leaf_node(point, n.childNodeInd[i]);
        if(result != s_invalidIndex)
          return result;
      }
    }
    else{
      return curNode;
    }
  }
  return s_invalidIndex;
}
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
add_entry_to_node(Node& node, size_t entryInd)
{
  if(node.firstEntryInd == s_invalidIndex){
    assert(node.numEntries == 0);
    node.firstEntryInd = node.lastEntryInd = entryInd;
  }
  else{
    m_entries[node.lastEntryInd].nextEntryInd = entryInd;
    node.lastEntryInd = entryInd;
  }
 
  m_entries[entryInd].nextEntryInd = s_invalidIndex;
  ++node.numEntries;
}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
void ntree<tree_dim, world_dim, elem_t, common_data_t>::
update_loose_bounding_box(Node& node)
{
  size_t entryInd = node.firstEntryInd;
  if(entryInd == s_invalidIndex){
    node.looseBox = node.tightBox;
    return;
  }
 
  Entry& entry = m_entries[entryInd];
  traits::calculate_bounding_box(node.looseBox, entry.elem, m_commonData);
 
  entryInd = entry.nextEntryInd;
  while(entryInd != s_invalidIndex){
    Entry& entry = m_entries[entryInd];
    box_t nbox;
    traits::calculate_bounding_box(nbox, entry.elem, m_commonData);
    traits::merge_boxes(node.looseBox, node.looseBox, nbox);
    entryInd = entry.nextEntryInd;
  }
  
//todo: Solve box-growing in a more portable way!
  typename traits::vector_t offset;
  offset = SMALL;
  traits::grow_box(node.looseBox, node.looseBox, offset);
}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
typename ntree<tree_dim, world_dim, elem_t, common_data_t>::vector_t
ntree<tree_dim, world_dim, elem_t, common_data_t>::
calculate_center_of_mass(Node& node)
{
  vector_t centerOfMass;
  VecSet(centerOfMass, 0);
 
  for(size_t entryInd = node.firstEntryInd; entryInd != s_invalidIndex;){
    Entry& entry = m_entries[entryInd];
 
    vector_t center;
    traits::calculate_center(center, entry.elem, m_commonData);
    VecAdd(centerOfMass, centerOfMass, center);
    entryInd = entry.nextEntryInd;
  }
 
  if(node.numEntries > 0)
    VecScale(centerOfMass, centerOfMass, (real_t)1 / (real_t)node.numEntries);
 
  return centerOfMass;
}
ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
    traits::calculate_bounding_box(nbox, entry.elem, m_commonData); {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>::
num_nodes() const
{
  return m_nodes.size();
}
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>::
num_child_nodes(size_t nodeId) const
{
  assert(nodeId < m_nodes.size());
  if(m_nodes[nodeId].childNodeInd[0] == s_invalidIndex)
    return 0;
  return s_numChildren;
}
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
const size_t* ntree<tree_dim, world_dim, elem_t, common_data_t>::
child_node_ids(size_t nodeId) const
{
  assert(nodeId < m_nodes.size());
  return m_nodes[nodeId].childNodeInd;
}
const size_t* ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
typename ntree<tree_dim, world_dim, elem_t, common_data_t>::elem_iterator_t
ntree<tree_dim, world_dim, elem_t, common_data_t>::
elems_begin(size_t nodeId) const
{
  assert(nodeId < m_nodes.size());
  if(m_entries.empty())
    return elem_iterator_t(NULL, s_invalidIndex);
  return elem_iterator_t(&m_entries.front(), m_nodes[nodeId].firstEntryInd);
}
ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
typename ntree<tree_dim, world_dim, elem_t, common_data_t>::elem_iterator_t
ntree<tree_dim, world_dim, elem_t, common_data_t>::
elems_end(size_t nodeId) const
{
  return elem_iterator_t(NULL, s_invalidIndex);
}
ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>::
num_elements(size_t nodeId) const
{
  assert(nodeId < m_nodes.size());
  return m_nodes[nodeId].numEntries;
}
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>::
level(size_t nodeId) const
{
  assert(nodeId < m_nodes.size());
  return m_nodes[nodeId].level;
}
size_t ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
template <int tree_dim, int world_dim, class elem_t, class common_data_t>
const typename ntree<tree_dim, world_dim, elem_t, common_data_t>::box_t&
ntree<tree_dim, world_dim, elem_t, common_data_t>::
bounding_box(size_t nodeId) const
{
  assert(nodeId < m_nodes.size());
  return m_nodes[nodeId].looseBox;
}
ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
 
}// end of namespace
 
#endif
  while(entryInd != s_invalidIndex) {…}
  traits::calculate_bounding_box(node.looseBox, entry.elem, m_commonData); {…}
  } {…}
 {…}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
          "child node for some elements during split_leaf_node in " {…}
  } {…}
     *--*/ {…}
      UG_LOG ("ERROR in ntree::split_leaf_node(): Element with center @ " << center {…}
    } {…}
        add_entry_to_node(m_nodes[firstChild + i_child], entryInd); {…}
    traits::calculate_center(center, entry.elem, m_commonData); {…}
    size_t nextEntryInd = entry.nextEntryInd; {…}
  size_t numEntriesAssigned = 0; {…}
  traits::split_box(childBoxes, node.tightBox, centerOfMass); {…}
//  the current node into 's_numChildren' child boxes. Each child box thereby {…}
  m_nodes.resize(firstChild + s_numChildren); {…}
  if(m_nodes[nodeIndex].childNodeInd[0] != s_invalidIndex) {…}
    return; {…}
        << "  Number of elements in this node: " << m_nodes[nodeIndex].numEntries << std::endl {…}
      UG_LOG("WARNING in ntree::split_leaf_node(): maximum tree depth " {…}
  {…}
  {…}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}
    root.tightBox = root.looseBox; {…}
  //  should be the same. {…}
void ntree<tree_dim, world_dim, elem_t, common_data_t>:: {…}