agglomerating_solver.h

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/*
 * Copyright (c) 2012-2015:  G-CSC, Goethe University Frankfurt
 * Author: Martin Rupp
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__LIB_ALGEBRA__LAPACK_AGGLOMERATING_LU_OPERATOR__
#define __H__LIB_ALGEBRA__LAPACK_AGGLOMERATING_LU_OPERATOR__
#include <iostream>
#include <sstream>
 
#include "lib_algebra/operator/interface/operator_inverse.h"
#include "lib_algebra/operator/interface/matrix_operator_inverse.h"
#include "lib_algebra/operator/interface/preconditioner.h"
 
#ifdef UG_PARALLEL
  #include "lib_algebra/parallelization/collect_matrix.h"
  #include "lib_algebra/parallelization/parallelization.h"
  #include "lib_algebra/parallelization/parallelization_util.h"
#endif
 
namespace ug{
 
 
#ifdef UG_PARALLEL
template<typename T>
void GatherVectorOnOne(HorizontalAlgebraLayouts &agglomerationLayout,
    ParallelVector<T> &collectedVec, const ParallelVector<T> &vec,
    ParallelStorageType type)
{
  bool bRoot = pcl::ProcRank() == vec.layouts()->proc_comm().get_proc_id(0);
  GatherVectorOnOne(agglomerationLayout.master(), agglomerationLayout.slave(), agglomerationLayout.comm(),
      collectedVec, vec, type, bRoot);
}
void GatherVectorOnOne(HorizontalAlgebraLayouts &agglomerationLayout, {…}
 
 
 
template<typename T>
void BroadcastVectorFromOne(HorizontalAlgebraLayouts &agglomerationLayout,
    ParallelVector<T> &vec, const ParallelVector<T> &collectedVec,
    ParallelStorageType type)
{
  bool bRoot = pcl::ProcRank() == vec.layouts()->proc_comm().get_proc_id(0);
  BroadcastVectorFromOne(agglomerationLayout.master(), agglomerationLayout.slave(),
      agglomerationLayout.comm(), vec, collectedVec, type, bRoot);
}
void BroadcastVectorFromOne(HorizontalAlgebraLayouts &agglomerationLayout, {…}
#endif
 
template <typename TBase, typename TAlgebra>
class AgglomeratingBase : public TBase
{
  public:
  //  Algebra type
    typedef TAlgebra algebra_type;
 
  //  Vector type
    typedef typename TAlgebra::vector_type vector_type;
 
  //  Matrix type
    typedef typename TAlgebra::matrix_type matrix_type;
 
  public:
  //  Destructor
    virtual ~AgglomeratingBase() {};
 
    bool i_am_root()
    {
      return m_bRoot;
      //m_bRoot = pcl::ProcRank() == agglomerationLayout.proc_comm().get_proc_id(0);;
    }
    bool i_am_root() {…}
 
    bool empty()
    {
      return m_bEmpty;
    }
    bool empty() {…}
 
    bool init_mat(const matrix_type &A)
    {
      try{
#ifdef UG_PARALLEL
      m_bEmpty = A.layouts()->proc_comm().empty();
      if(m_bEmpty) return true;
      m_bRoot = pcl::ProcRank() == A.layouts()->proc_comm().get_proc_id(0);
      PROFILE_FUNC();
 
      m_spCollectedOp = make_sp(new MatrixOperator<matrix_type, vector_type>());
      matrix_type &collectedA = m_spCollectedOp->get_matrix();
 
      CollectMatrixOnOneProc(A, collectedA, agglomerationLayout.master(), agglomerationLayout.slave());
      agglomerationLayout.comm() = A.layouts()->comm();
      agglomerationLayout.proc_comm() = A.layouts()->proc_comm();
 
      m_spLocalAlgebraLayouts = CreateLocalAlgebraLayouts();
      collectedA.set_layouts(m_spLocalAlgebraLayouts);
#else
      m_bEmpty = false;
      m_bRoot = true;
#endif
      }UG_CATCH_THROW("AgglomeratingBase::" << __FUNCTION__ << " failed")
      return true;
    }
    bool init_mat(const matrix_type &A) {…}
 
#ifdef UG_PARALLEL
    void init_collected_vec(vector_type &collectedX)
    {
      if(i_am_root())
      {
        matrix_type &collectedA = m_spCollectedOp->get_matrix();
        collectedX.resize(collectedA.num_rows());
        collectedX.set_layouts(m_spLocalAlgebraLayouts);
      }
    }
    void init_collected_vec(vector_type &collectedX) {…}
 
    void gather_vector_on_one(vector_type &collectedB, const vector_type &b, ParallelStorageType type)
    {
      GatherVectorOnOne(agglomerationLayout, collectedB, b, PST_ADDITIVE);
    }
    void gather_vector_on_one(vector_type &collectedB, const vector_type &b, ParallelStorageType type) {…}
 
    void broadcast_vector_from_one(vector_type &x, const vector_type &collectedX, ParallelStorageType type)
    {
      BroadcastVectorFromOne(agglomerationLayout, x, collectedX, PST_CONSISTENT);
    }
    void broadcast_vector_from_one(vector_type &x, const vector_type &collectedX, ParallelStorageType type) {…}
#endif
 
    virtual bool init_agglomerated(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op) = 0;
    virtual bool apply_agglomerated(vector_type& x, const vector_type& b) = 0;
 
    bool is_serial()
    {
      UG_COND_THROW(m_pMatrix == NULL, "ERROR: No Matrix given.");
#ifdef UG_PARALLEL
      return m_pMatrix->layouts()->proc_comm().is_local() || m_pMatrix->layouts()->proc_comm().empty();
 
#else
      return true;
#endif
    }
    bool is_serial() {…}
 
    bool base_init(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op)
    {
      try{
      PROFILE_FUNC();
    //  get matrix of Operator
      m_pMatrix = &Op->get_matrix();
 
 
#ifdef UG_PARALLEL
      if(is_serial())
        return init_agglomerated(Op);
 
      PROFILE_BEGIN(AGGLOMERATING_Solver_BARRIER);
        m_pMatrix->layouts()->proc_comm().barrier();
      PROFILE_END();
 
    //  init LU operator
      if(!init_mat(*m_pMatrix))
        {UG_LOG("ERROR in LUOperator::init: Cannot init LU Decomposition.\n"); return false;}
 
      bool bSuccess=true;
      if(i_am_root())
      {
        init_collected_vec(collectedX);
        init_collected_vec(collectedB);
        bSuccess = init_agglomerated(m_spCollectedOp);
        //UG_DLOG(LIB_ALG_LINEAR_SOLVER, 1,
        if(collectedX.size() != m_pMatrix->num_rows()) {
          UG_LOG("Agglomerated on proc 0. Size is " << collectedX.size() << "(was on this proc: "
            << m_pMatrix->num_rows() << ")\n");
        }
      }
      if(pcl::AllProcsTrue(bSuccess, m_pMatrix->layouts()->proc_comm()) == false) return false;
      return true;
#else
      return init_agglomerated(Op);
#endif
      }UG_CATCH_THROW("AgglomeratingBase::" << __FUNCTION__ << " failed")
    }
    bool base_init(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op) {…}
 
 
    virtual bool base_init(SmartPtr<ILinearOperator<vector_type> > A)
    {
    //  cast operator
      SmartPtr<MatrixOperator<matrix_type,vector_type> > op =
                  A.template cast_dynamic<MatrixOperator<matrix_type,vector_type> >();
 
    //  check if correct types are present
      if(op.invalid())
        UG_THROW("IMatrixOperatorInverse::init:"
            " Passed operator is not matrix-based.");
 
    //  forward request
      return base_init(op);
    }
    virtual bool base_init(SmartPtr<ILinearOperator<vector_type> > A) {…}
 
    virtual bool apply(vector_type& x, const vector_type& b)
    {
      try{
 
      if(is_serial())
        return apply_agglomerated(x, b);
#if UG_PARALLEL
      if(empty()) return true;
 
      gather_vector_on_one(collectedB, b, PST_ADDITIVE);
 
      collectedX.set(0.0);
      if(i_am_root())
        apply_agglomerated(collectedX, collectedB);
 
      broadcast_vector_from_one(x, collectedX, PST_CONSISTENT);
#endif
      }UG_CATCH_THROW("AgglomeratingBase::" << __FUNCTION__ << " failed")
    //  we're done
      return true;
    }
    virtual bool apply(vector_type& x, const vector_type& b) {…}
 
  //  Compute u = L^{-1} * f AND return defect f := f - L*u
 
    virtual bool apply_return_defect(vector_type& u, vector_type& f)
    {
      PROFILE_FUNC();
    //  solve u
      if(!apply(u, f)) return false;
 
    //  calculate defect
      f.set(0.0);
      if(!m_pMatrix->matmul_minus(f, u))
      {
        UG_LOG("ERROR in 'LUSolver::apply_return_defect': Cannot apply matmul_minus.\n");
        return false;
      }
 
    //  we're done
      return true;
    }
    virtual bool apply_return_defect(vector_type& u, vector_type& f) {…}
 
    virtual bool apply_update_defect(vector_type& u, vector_type& f)
    {
      PROFILE_FUNC();
    //  solve u
      if(!apply(u, f)) return false;
    //  update defect
      if(!m_pMatrix->matmul_minus(f, u))
      {
        UG_LOG("ERROR in 'LUSolver::apply_return_defect': Cannot apply matmul_minus.\n");
        return false;
      }
 
    //  we're done
      return true;
    }
    virtual bool apply_update_defect(vector_type& u, vector_type& f) {…}
 
    virtual bool step(SmartPtr<MatrixOperator<matrix_type, vector_type> > pOp, vector_type& c, const vector_type& d)
    {
      return apply(c, d);
    }
    virtual bool step(SmartPtr<MatrixOperator<matrix_type, vector_type> > pOp, vector_type& c, const vector_type& d) {…}
 
 
 
  protected:
    // Operator to invert
 
    // matrix to invert
    matrix_type* m_pMatrix;
#ifdef UG_PARALLEL
    vector_type collectedB, collectedX;
    HorizontalAlgebraLayouts agglomerationLayout;
    SmartPtr<MatrixOperator<matrix_type, vector_type> > m_spCollectedOp;
    SmartPtr<AlgebraLayouts> m_spLocalAlgebraLayouts;
#endif
 
    bool m_bRoot;
    bool m_bEmpty;
 
};
class AgglomeratingBase : public TBase {…};
 
 
 
template <typename TAlgebra>
class AgglomeratingSolver : public
  AgglomeratingBase<IMatrixOperatorInverse< typename TAlgebra::matrix_type, typename TAlgebra::vector_type>, TAlgebra >
{
  public:
  //  Algebra type
    typedef TAlgebra algebra_type;
 
  //  Vector type
    typedef typename TAlgebra::vector_type vector_type;
 
  //  Matrix type
    typedef typename TAlgebra::matrix_type matrix_type;
 
    typedef AgglomeratingBase<IMatrixOperatorInverse<matrix_type,vector_type>, algebra_type > base_type;
 
 
  public:
    AgglomeratingSolver(SmartPtr<ILinearOperatorInverse<vector_type, vector_type> > linOpInverse)
    {
      UG_COND_THROW(linOpInverse.valid()==false, "linOpInverse has to be != NULL");
      m_pLinOpInverse = linOpInverse;
      m_name = std::string("AgglomeratingSolver(") + linOpInverse->name() + ")";
    };
    AgglomeratingSolver(SmartPtr<ILinearOperatorInverse<vector_type, vector_type> > linOpInverse) {…}
 
    virtual bool init_agglomerated(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op)
    {
      try{
        return m_pLinOpInverse->init(Op);
      }UG_CATCH_THROW("AgglomeratingSolver::" << __FUNCTION__ << " failed")
    }
    virtual bool init_agglomerated(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op) {…}
    virtual bool apply_agglomerated(vector_type& x, const vector_type& b)
    {
      try{
        return m_pLinOpInverse->apply(x, b);
      }UG_CATCH_THROW("AgglomeratingSolver::" << __FUNCTION__ << " failed")
    }
    virtual bool apply_agglomerated(vector_type& x, const vector_type& b) {…}
 
  //  Destructor
    virtual ~AgglomeratingSolver() {};
 
 
    virtual const char* name() const
    {
      return m_name.c_str();
    }
    virtual const char* name() const {…}
 
    virtual bool supports_parallel() const { return true; }
 
    virtual std::string config_string() const
    {
      return std::string("AgglomeratingSolver: ") + m_pLinOpInverse->config_string();
    }
    virtual std::string config_string() const {…}
 
    virtual bool init(SmartPtr<ILinearOperator<vector_type> > A)
    {
      return base_type::base_init(A);
    }
    virtual bool init(SmartPtr<ILinearOperator<vector_type> > A) {…}
    virtual bool init(SmartPtr<ILinearOperator<vector_type> > A, const vector_type& u)
    {
      return base_type::base_init(A);
    }
    virtual bool init(SmartPtr<ILinearOperator<vector_type> > A, const vector_type& u) {…}
    virtual bool init(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op)
    {
      return base_type::base_init(Op);
    }
    virtual bool init(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op) {…}
 
 
  protected:
    SmartPtr<ILinearOperatorInverse<vector_type, vector_type> > m_pLinOpInverse;
    std::string m_name;
};
class AgglomeratingSolver : public {…};
 
 
 
template <typename TAlgebra>
class AgglomeratingIterator : public
  AgglomeratingBase<ILinearIterator<typename TAlgebra::vector_type>, TAlgebra >
{
  public:
  //  Algebra type
    typedef TAlgebra algebra_type;
 
  //  Vector type
    typedef typename TAlgebra::vector_type vector_type;
 
  //  Matrix type
    typedef typename TAlgebra::matrix_type matrix_type;
 
    typedef AgglomeratingBase<ILinearIterator<vector_type>, algebra_type > base_type;
 
  public:
    AgglomeratingIterator(SmartPtr<ILinearIterator<vector_type> > splinIt)
    {
      UG_COND_THROW(splinIt.valid()==false, "linOpInverse has to be != NULL");
      m_splinIt = splinIt;
      m_name = std::string("AgglomeratingIterator(") + splinIt->name() + std::string(")");
    }
    AgglomeratingIterator(SmartPtr<ILinearIterator<vector_type> > splinIt) {…}
 
    virtual bool init_agglomerated(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op)
    {
      try{
        return m_splinIt->init(Op);
      }UG_CATCH_THROW("AgglomeratingIterator::" << __FUNCTION__ << " failed")
    }
    virtual bool init_agglomerated(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op) {…}
    virtual bool apply_agglomerated(vector_type& x, const vector_type& b)
    {
      try{
        return m_splinIt->apply(x, b);
      }UG_CATCH_THROW("AgglomeratingIterator::" << __FUNCTION__ << " failed")
    }
    virtual bool apply_agglomerated(vector_type& x, const vector_type& b) {…}
 
  //  Destructor
    virtual ~AgglomeratingIterator() {};
 
 
    virtual const char* name() const
    {
      return m_name.c_str();
    }
    virtual const char* name() const {…}
 
    virtual bool supports_parallel() const { return true; }
 
    virtual SmartPtr<ILinearIterator<vector_type> > clone()
    {
      SmartPtr<ILinearIterator<vector_type> > linIt = m_splinIt->clone();
      return make_sp(new AgglomeratingIterator<algebra_type>(linIt));
    }
    virtual SmartPtr<ILinearIterator<vector_type> > clone() {…}
 
    virtual std::string config_string() const
    {
      return std::string("AgglomeratingIterator: ") + m_splinIt->config_string();
    }
    virtual std::string config_string() const {…}
 
 
    virtual bool init(SmartPtr<ILinearOperator<vector_type> > A)
    {
      return base_type::base_init(A);
    }
    virtual bool init(SmartPtr<ILinearOperator<vector_type> > A) {…}
    virtual bool init(SmartPtr<ILinearOperator<vector_type> > A, const vector_type& u)
    {
      return base_type::base_init(A);
    }
    virtual bool init(SmartPtr<ILinearOperator<vector_type> > A, const vector_type& u) {…}
 
 
  protected:
    SmartPtr<ILinearIterator<vector_type> > m_splinIt;
    std::string m_name;
};
class AgglomeratingIterator : public {…};
 
template <typename TAlgebra>
class AgglomeratingPreconditioner: public
  AgglomeratingBase<IPreconditioner<TAlgebra>, TAlgebra >
{
  public:
  //  Algebra type
    typedef TAlgebra algebra_type;
 
  //  Vector type
    typedef typename TAlgebra::vector_type vector_type;
 
  //  Matrix type
    typedef typename TAlgebra::matrix_type matrix_type;
 
    typedef AgglomeratingBase<IPreconditioner<TAlgebra>, TAlgebra > base_type;
 
  public:
    AgglomeratingPreconditioner(SmartPtr<ILinearIterator<vector_type> > splinIt)
    {
      UG_COND_THROW(splinIt.valid()==false, "linOpInverse has to be != NULL");
      m_splinIt = splinIt;
      m_name = std::string("AgglomeratingPreconditioner(") + splinIt->name() + std::string(")");
    }
    AgglomeratingPreconditioner(SmartPtr<ILinearIterator<vector_type> > splinIt) {…}
 
    virtual bool init_agglomerated(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op)
    {
      try{
        return m_splinIt->init(Op);
      }UG_CATCH_THROW("AgglomeratingIterator::" << __FUNCTION__ << " failed")
    }
    virtual bool init_agglomerated(SmartPtr<MatrixOperator<matrix_type, vector_type> > Op) {…}
    virtual bool apply_agglomerated(vector_type& x, const vector_type& b)
    {
      try{
        return m_splinIt->apply(x, b);
      }UG_CATCH_THROW("AgglomeratingIterator::" << __FUNCTION__ << " failed")
    }
    virtual bool apply_agglomerated(vector_type& x, const vector_type& b) {…}
 
  //  Destructor
    virtual ~AgglomeratingPreconditioner() {};
 
 
    virtual const char* name() const
    {
      return m_name.c_str();
    }
    virtual const char* name() const {…}
 
    virtual bool supports_parallel() const { return true; }
 
    virtual SmartPtr<ILinearIterator<vector_type> > clone()
    {
      SmartPtr<ILinearIterator<vector_type> > linIt = m_splinIt->clone();
      return make_sp(new AgglomeratingIterator<algebra_type>(linIt));
    }
    virtual SmartPtr<ILinearIterator<vector_type> > clone() {…}
 
    virtual std::string config_string() const
    {
      return std::string("AgglomeratingPreconditioner: ") + m_splinIt->config_string();
    }
    virtual std::string config_string() const {…}
 
    virtual bool postprocess() { return true; }
    virtual bool preprocess(SmartPtr<MatrixOperator<typename TAlgebra::matrix_type, typename TAlgebra::vector_type> > pOp)
    {
      return base_type::base_init(pOp);
    }
    virtual bool preprocess(SmartPtr<MatrixOperator<typename TAlgebra::matrix_type, typename TAlgebra::vector_type> > pOp) {…}
 
 
  protected:
    SmartPtr<ILinearIterator<vector_type> > m_splinIt;
    std::string m_name;
};
class AgglomeratingPreconditioner: public {…};
 
 
 
} // end namespace ug
 
#endif /* __H__LIB_ALGEBRA__LAPACK_LU_OPERATOR__ */