domain_distribution_impl.hpp

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/*
 * Copyright (c) 2011-2015:  G-CSC, Goethe University Frankfurt
 * Author: Sebastian Reiter
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__UG__domain_distribution_impl__
#define __H__UG__domain_distribution_impl__
 
#include "domain_distribution.h"
#include "lib_grid/algorithms/attachment_util.h"
#include "lib_grid/parallelization/deprecated/load_balancing.h"
#include "common/serialization.h"
 
#ifdef UG_PARALLEL
  #include "pcl/pcl.h"
  #include "lib_grid/parallelization/distribution.h"
#endif
 
 
namespace ug
{
 
template <typename TDomain>
static bool PartitionDomain_RegularGrid(TDomain& domain, PartitionMap& partitionMap,
                    int numCellsX, int numCellsY, int numCellsZ,
                    bool surfaceOnly)
{
  PROFILE_FUNC_GROUP("parallelization");
//  prepare the partition map and a vertex position attachment accessor
  SmartPtr<MultiGrid> pMG = domain.grid();
  partitionMap.assign_grid(*pMG);
 
  #ifdef UG_PARALLEL
  
  SubsetHandler& partitionHandler = *partitionMap.get_partition_handler();
  
  //  a distributed grid manager is required
    if(!domain.distributed_grid_manager()){
      UG_LOG("A distributed grid manager is required in the given domain.\n");
      return false;
    }
 
    typedef typename TDomain::position_attachment_type TAPos;
    Grid::AttachmentAccessor<Vertex, TAPos> aaPos(*pMG,
                        domain.position_attachment());
 
  //  this callback allows us to only distribute surface elements, which are no ghosts
    IsRegularSurfaceElem cbConsiderElem(*domain.distributed_grid_manager());
 
  //  we need a process to which elements which are not considered will be send.
  //  Those elements should stay on the current process.
    int localProc = 0;
    localProc = pcl::ProcRank();
 
    int bucketSubset = partitionMap.find_target_proc(localProc);
    if(bucketSubset == -1)
      bucketSubset = (int)partitionMap.num_target_procs();
 
  //  partition the grid
    if(pMG->num<Volume>() > 0){
      if(!surfaceOnly)
        PartitionElements_RegularGrid<Volume>(
                      partitionHandler,
                      pMG->begin<Volume>(), pMG->end<Volume>(),
                      numCellsX, numCellsY, numCellsZ, aaPos,
                      ConsiderAll(), bucketSubset);
      else
        PartitionElements_RegularGrid<Volume>(
                      partitionHandler,
                      pMG->begin<Volume>(), pMG->end<Volume>(),
                      numCellsX, numCellsY, numCellsZ, aaPos,
                      cbConsiderElem, bucketSubset);
    }
    else if(pMG->num<Face>() > 0){
      if(!surfaceOnly)
        PartitionElements_RegularGrid<Face>(
                      partitionHandler,
                      pMG->begin<Face>(), pMG->end<Face>(),
                      numCellsX, numCellsY, numCellsZ, aaPos,
                      ConsiderAll(), bucketSubset);
      else
        PartitionElements_RegularGrid<Face>(
                      partitionHandler,
                      pMG->begin<Face>(), pMG->end<Face>(),
                      numCellsX, numCellsY, numCellsZ, aaPos,
                      cbConsiderElem, bucketSubset);
    }
    else if(pMG->num<Edge>() > 0){
      if(!surfaceOnly)
        PartitionElements_RegularGrid<Edge>(
                      partitionHandler,
                      pMG->begin<Edge>(), pMG->end<Edge>(),
                      numCellsX, numCellsY, numCellsZ, aaPos,
                      ConsiderAll(), bucketSubset);
      else
        PartitionElements_RegularGrid<Edge>(
                      partitionHandler,
                      pMG->begin<Edge>(), pMG->end<Edge>(),
                      numCellsX, numCellsY, numCellsZ, aaPos,
                      cbConsiderElem, bucketSubset);
    }
    else if(pMG->num<Vertex>() > 0){
      if(!surfaceOnly)
        PartitionElements_RegularGrid<Vertex>(
                      partitionHandler,
                      pMG->begin<Vertex>(), pMG->end<Vertex>(),
                      numCellsX, numCellsY, numCellsZ, aaPos,
                      ConsiderAll(), bucketSubset);
      else
        PartitionElements_RegularGrid<Vertex>(
                      partitionHandler,
                      pMG->begin<Vertex>(), pMG->end<Vertex>(),
                      numCellsX, numCellsY, numCellsZ, aaPos,
                      cbConsiderElem, bucketSubset);
    }
    else{
      LOG("partitioning could not be performed - "
        << "grid doesn't contain any elements!\n");
      return false;
    }
 
  //  if elements have been assigned to bucketProc, then we have to make sure,
  //  that it is also present in the process-map
    if(!partitionHandler.empty(bucketSubset)){
      if(bucketSubset >= (int)partitionMap.num_target_procs())
        partitionMap.add_target_proc(localProc);
    }
 
    return true;
  #endif
 
  UG_LOG("WARNING: PartitionDomain_RegularGrid is currently only implemented for");
  UG_LOG(" parallel environments.\n");
  return false;
}
static bool PartitionDomain_RegularGrid(TDomain& domain, PartitionMap& partitionMap, {…}
 
template <typename TDomain>
static bool
PartitionDomain_MetisKWay(TDomain& domain, PartitionMap& partitionMap,
              int numPartitions, size_t baseLevel,
              int hWeight, int vWeight)
{
  PROFILE_FUNC_GROUP("parallelization");
//  prepare the partition map
  SmartPtr<MultiGrid> pMG = domain.grid();
  partitionMap.assign_grid(*pMG);
 
#ifdef UG_PARALLEL
  
  SubsetHandler& partitionHandler = *partitionMap.get_partition_handler();
  
//  we need a process to which elements which are not considered will be send.
//  Those elements should stay on the current process.
  int localProc = 0;
  localProc = pcl::ProcRank();
 
  int bucketSubset = partitionMap.find_target_proc(localProc);
  if(bucketSubset == -1)
    bucketSubset = (int)partitionMap.num_target_procs();
 
//  call the actual partitioning routine
  if(pMG->num<Volume>() > 0){
    PartitionMultiGrid_MetisKway<Volume>(partitionHandler, *pMG, numPartitions,
                      baseLevel, hWeight, vWeight);
  //  assign all elements below baseLevel to bucketSubset
    for(size_t lvl = 0; lvl < baseLevel; ++lvl)
      partitionHandler.assign_subset(pMG->begin<Volume>(lvl), pMG->end<Volume>(lvl),
                 bucketSubset);
  }
  else if(pMG->num<Face>() > 0){
    PartitionMultiGrid_MetisKway<Face>(partitionHandler, *pMG, numPartitions,
                      baseLevel, hWeight, vWeight);
  //  assign all elements below baseLevel to bucketSubset
    for(size_t lvl = 0; lvl < baseLevel; ++lvl)
      partitionHandler.assign_subset(pMG->begin<Face>(lvl), pMG->end<Face>(lvl),
                 bucketSubset);
  }
  else if(pMG->num<Edge>() > 0){
    PartitionMultiGrid_MetisKway<Edge>(partitionHandler, *pMG, numPartitions,
                        baseLevel, hWeight, vWeight);
  //  assign all elements below baseLevel to bucketSubset
    for(size_t lvl = 0; lvl < baseLevel; ++lvl)
      partitionHandler.assign_subset(pMG->begin<Edge>(lvl), pMG->end<Edge>(lvl),
                 bucketSubset);
  }
 
  if(!partitionHandler.empty(bucketSubset)){
    if(bucketSubset >= (int)partitionMap.num_target_procs())
      partitionMap.add_target_proc(localProc);
  }
 
  return true;
#else
  UG_LOG("WARNING in PartitionDomain_MetisKWay: Only available in parallel builds.\n");
  return false;
#endif
}
PartitionDomain_MetisKWay(TDomain& domain, PartitionMap& partitionMap, {…}
 
template <typename TDomain>
static bool
PartitionDomain_MetisKWay(TDomain& domain, PartitionMap& partitionMap,
              int numPartitions, size_t baseLevel,
              SmartPtr<PartitionWeighting> weightFct)
{
  PROFILE_FUNC_GROUP("parallelization");
//  prepare the partition map
  SmartPtr<MultiGrid> pMG = domain.grid();
  partitionMap.assign_grid(*pMG);
 
#ifdef UG_PARALLEL
 
  SubsetHandler& partitionHandler = *partitionMap.get_partition_handler();
 
  PartitionWeighting& wFct = *weightFct;
  wFct.set_subset_handler(domain.subset_handler().operator->());
//  we need a process to which elements which are not considered will be send.
//  Those elements should stay on the current process.
  int localProc = 0;
  localProc = pcl::ProcRank();
 
  int bucketSubset = partitionMap.find_target_proc(localProc);
  if(bucketSubset == -1)
    bucketSubset = (int)partitionMap.num_target_procs();
 
//  call the actual partitioning routine
  if(pMG->num<Volume>() > 0){
    // do not use boost::function<...> f = wFct, since this leads to slicing
    // of wFct and losing properties of derived objects
    boost::function<int (Volume*, Volume*)> f = boost::ref(wFct);
    PartitionMultiGrid_MetisKway<Volume>(partitionHandler, *pMG, numPartitions, baseLevel, f);
  //  assign all elements below baseLevel to bucketSubset
    for(size_t lvl = 0; lvl < baseLevel; ++lvl)
      partitionHandler.assign_subset(pMG->begin<Volume>(lvl), pMG->end<Volume>(lvl),
                 bucketSubset);
  }
  else if(pMG->num<Face>() > 0){
    boost::function<int (Face*, Face*)> f = boost::ref(wFct);
    PartitionMultiGrid_MetisKway<Face>(partitionHandler, *pMG, numPartitions, baseLevel, f);
  //  assign all elements below baseLevel to bucketSubset
    for(size_t lvl = 0; lvl < baseLevel; ++lvl)
      partitionHandler.assign_subset(pMG->begin<Face>(lvl), pMG->end<Face>(lvl),
                 bucketSubset);
  }
  else if(pMG->num<Edge>() > 0){
    boost::function<int (Edge*, Edge*)> f = boost::ref(wFct);
    PartitionMultiGrid_MetisKway<Edge>(partitionHandler, *pMG, numPartitions, baseLevel, f);
  //  assign all elements below baseLevel to bucketSubset
    for(size_t lvl = 0; lvl < baseLevel; ++lvl)
      partitionHandler.assign_subset(pMG->begin<Edge>(lvl), pMG->end<Edge>(lvl),
                 bucketSubset);
  }
 
  if(!partitionHandler.empty(bucketSubset)){
    if(bucketSubset >= (int)partitionMap.num_target_procs())
      partitionMap.add_target_proc(localProc);
  }
 
  return true;
#else
  UG_LOG("WARNING in PartitionDomain_MetisKWay: Only available in parallel builds.\n");
  return false;
#endif
}
PartitionDomain_MetisKWay(TDomain& domain, PartitionMap& partitionMap, {…}
 
 
template <typename TDomain>
static bool
PartitionDomain_LevelBased(TDomain& domain, PartitionMap& partitionMap,
                   int numPartitions, size_t level)
{
  PROFILE_FUNC_GROUP("parallelization");
  //  prepare the partition map
  SmartPtr<MultiGrid> pMG = domain.grid();
  partitionMap.assign_grid(*pMG);
  SubsetHandler& partitionHandler = *partitionMap.get_partition_handler();
 
//  call the actual partitioning routine
  switch(domain.domain_info().element_type()){
    case VOLUME:
      PartitionMultiGridLevel_MetisKway<Volume>(partitionHandler, *pMG, numPartitions, level);
      break;
 
    case FACE:
      PartitionMultiGridLevel_MetisKway<Face>(partitionHandler, *pMG, numPartitions, level);
      break;
 
    case EDGE:
      PartitionMultiGridLevel_MetisKway<Edge>(partitionHandler, *pMG, numPartitions, level);
      break;
 
    default:
      UG_THROW("Partitioning only works for element types EDGE, FACE, and VOLUME!");
      break;
  }
 
  return true;
}
PartitionDomain_LevelBased(TDomain& domain, PartitionMap& partitionMap, {…}
 
 
template <typename TDomain>
static bool
PartitionDistributedDomain_LevelBased(TDomain& domain, PartitionMap& partitionMap,
                               int numPartitions, size_t level)
{
  PROFILE_FUNC_GROUP("parallelization");
  //  prepare the partition map
  SmartPtr<MultiGrid> pMG = domain.grid();
  partitionMap.assign_grid(*pMG);
  SubsetHandler& partitionHandler = *partitionMap.get_partition_handler();
 
//  call the actual partitioning routine
  switch(domain.domain_info().element_type()){
    case VOLUME:
      PartitionMultiGridLevel_ParmetisKway<Volume>(partitionHandler, *pMG, numPartitions, level);
      break;
 
    case FACE:
      PartitionMultiGridLevel_ParmetisKway<Face>(partitionHandler, *pMG, numPartitions, level);
      break;
 
    case EDGE:
      PartitionMultiGridLevel_ParmetisKway<Edge>(partitionHandler, *pMG, numPartitions, level);
      break;
 
    default:
      UG_THROW("Partitioning only works for element types EDGE, FACE, and VOLUME!");
      break;
  }
 
  return true;
}
PartitionDistributedDomain_LevelBased(TDomain& domain, PartitionMap& partitionMap, {…}
 
 
template <typename TDomain>
static bool DistributeDomain(TDomain& domainOut,
               PartitionMap& partitionMap,
               bool createVerticalInterfaces)
{
  PROFILE_FUNC_GROUP("parallelization");
//todo  Use a process-communicator to restrict communication
 
//  make sure that the input is fine
  typedef typename TDomain::grid_type GridType;
  SmartPtr<GridType> pGrid = domainOut.grid();
  SubsetHandler& partitionHandler = *partitionMap.get_partition_handler();
 
  if(partitionHandler.grid() != pGrid.get()){
    partitionMap.assign_grid(*pGrid);
  }
 
#ifdef UG_PARALLEL
 
  typedef typename TDomain::position_attachment_type  position_attachment_type;
  
//  used to check whether all processes are correctly prepared for redistribution
  //bool performDistribution = true;
 
//  make sure that the number of subsets and target processes match
//  THIS MAKES NO SENSE FOR PARALLEL REDISTRIBUTION - IT IS CLEAR THAT SOME
//  PROCS WON'T DELIVER TO ALL PROCS IN THE MAP.
/*  const int numSubs = partitionHandler.num_subsets();
  const int numTargetProcs = (int)partitionMap.num_target_procs();
  if(numSubs > numTargetProcs){
    UG_LOG("ERROR in RedistributeDomain: More partitions than target processes.\n");
    performDistribution = false;
  }
  else if(numSubs < numTargetProcs){
    UG_LOG("ERROR in RedistributeDomain: More target processes than partitions.\n");
    performDistribution = false;
  }
*/
 
//todo: check whether all target-processes in partitionMap are in the valid range.
 
  PCL_PROFILE(RedistributeDomain);
 
//todo  Use a process-communicator to restrict communication
/*
  if(!pcl::AllProcsTrue(performDistribution))
    return false;
*/
 
//  data serialization
  SPVertexDataSerializer posSerializer =
      GeomObjAttachmentSerializer<Vertex, position_attachment_type>::
								create(*pGrid, domainOut.position_attachment());
 
  SPGridDataSerializer shSerializer = SubsetHandlerSerializer::
											create(*domainOut.subset_handler());
 
  GridDataSerializationHandler serializer;
  serializer.add(posSerializer);
  serializer.add(shSerializer);
 
  std::vector<std::string> additionalSHNames = domainOut.additional_subset_handler_names();
  for(size_t i = 0; i < additionalSHNames.size(); ++i){
    SmartPtr<ISubsetHandler> sh = domainOut.additional_subset_handler(additionalSHNames[i]);
    if(sh.valid()){
      SPGridDataSerializer shSerializer = SubsetHandlerSerializer::create(*sh);
      serializer.add(shSerializer);
    }
  }
 
//  now call redistribution
  DistributeGrid(*pGrid, partitionHandler, serializer, createVerticalInterfaces,
           &partitionMap.get_target_proc_vec());
 
  PCL_PROFILE_END();
#endif
 
//  in the serial case there's nothing to do.
  return true;
}
static bool DistributeDomain(TDomain& domainOut, {…}
 
}// end of namespace
 
#endif