grid_function_impl.h

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/*
 * Copyright (c) 2011-2015:  G-CSC, Goethe University Frankfurt
 * Author: Andreas Vogel
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__UG__LIB_DISC__FUNCTION_SPACE__GRID_FUNCTION_IMPL__
#define __H__UG__LIB_DISC__FUNCTION_SPACE__GRID_FUNCTION_IMPL__
 
#include "grid_function.h"
 
#include "lib_algebra/algebra_type.h"
#include "adaption_surface_grid_function.h"
#include "lib_grid/algorithms/serialization.h"
#include "common/profiler/profiler.h"
 
#ifdef UG_PARALLEL
  #include "pcl/pcl.h"
  #include "lib_algebra/parallelization/parallelization.h"
  #include "lib_grid/parallelization/util/compol_copy_attachment.h"
#endif
 
namespace ug{
 
// GridFunction : init
 
template <typename TDomain, typename TAlgebra>
GridFunction<TDomain, TAlgebra>::
GridFunction(SmartPtr<ApproximationSpace<TDomain> > spApproxSpace,
             SmartPtr<DoFDistribution> spDoFDistr, bool bManage)
{
  init(spApproxSpace, spDoFDistr, bManage);
};
GridFunction<TDomain, TAlgebra>:: {…}
 
template <typename TDomain, typename TAlgebra>
GridFunction<TDomain, TAlgebra>::
GridFunction(SmartPtr<ApproximationSpace<TDomain> > spApproxSpace, bool bManage)
{
  init(spApproxSpace, spApproxSpace->dof_distribution(GridLevel(GridLevel::TOP, GridLevel::SURFACE, false)), bManage);
};
GridFunction<TDomain, TAlgebra>:: {…}
 
template <typename TDomain, typename TAlgebra>
GridFunction<TDomain, TAlgebra>::
GridFunction(SmartPtr<ApproximationSpace<TDomain> > spApproxSpace, int level, bool bManage)
{
  init(spApproxSpace, spApproxSpace->dof_distribution(GridLevel(level, GridLevel::SURFACE, false)), bManage);
};
GridFunction<TDomain, TAlgebra>:: {…}
 
template <typename TDomain, typename TAlgebra>
GridFunction<TDomain, TAlgebra>::
GridFunction(SmartPtr<approximation_space_type> spApproxSpace, const GridLevel& gl, bool bManage)
{
  init(spApproxSpace, spApproxSpace->dof_distribution(gl), bManage);
};
GridFunction<TDomain, TAlgebra>:: {…}
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::
init(SmartPtr<ApproximationSpace<TDomain> > spApproxSpace,
     SmartPtr<DoFDistribution> spDoFDistr, bool bManage)
{
  m_spApproxSpace = spApproxSpace;
  m_spDD = spDoFDistr;
  m_bManaged = bManage;
  m_bRedistribute = true;
  this->set_dof_distribution_info(m_spApproxSpace->dof_distribution_info());
  m_spAdaptGridFct = SPNULL;
 
//  check correct passings
  if(m_spDD.invalid()) UG_THROW("GridFunction: DoF Distribution is null.");
  if(m_spApproxSpace.invalid()) UG_THROW("GridFunction: ApproxSpace is null.");
 
//  check correct choice of compile-time algebra
  check_algebra();
 
//  resize the vector to correct size
  resize_values(num_indices());
 
  if(bManage) {
    //  registered as managed by dof distribution
    m_spDD->manage_grid_function(*this);
 
    //  register to observe grid
    register_at_adaption_msg_hub();
  }
 
 
#ifdef UG_PARALLEL
//  set layouts
  this->set_layouts(m_spDD->layouts());
 
//  set storage type
  this->set_storage_type(PST_UNDEFINED);
#endif
};
GridFunction<TDomain, TAlgebra>:: {…}
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::check_algebra()
{
//  get blocksize of algebra
  const int blockSize = algebra_type::blockSize;
 
//  a)  If blocksize fixed and > 1, we need grouping.
  if(blockSize > 1 && !this->m_spDD->grouped())
  {
    UG_THROW("Fixed block algebra needs grouped dofs.");
  }
//  b)  If blocksize flexible, we group
  else if (blockSize == AlgebraType::VariableBlockSize
      && !this->m_spDD->grouped())
  {
    UG_THROW("Variable block algebra needs grouped dofs.");
  }
//  c)  If blocksize == 1, we do not group. This will allow us to handle
//    this case for any problem.
  else if (blockSize == 1 && this->m_spDD->grouped())
  {
    UG_THROW("block 1x1 algebra needs non-grouped dofs.");
  }
}
GridFunction<TDomain, TAlgebra>::check_algebra() {…}
 
template <typename TDomain, typename TAlgebra>
size_t
GridFunction<TDomain, TAlgebra>::
num_dofs(int fct, int si) const
{
  DoFCount dc = m_spDD->dof_count();
  dc.sum_values_over_procs();
 
  return dc.num(fct, si, DoFCount::UNIQUE_SS, DoFCount::UNIQUE_ES);
}
GridFunction<TDomain, TAlgebra>:: {…}
 
// GridFunction : cloning
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::
clone_pattern(const this_type& v)
{
//  init normally
  init(v.m_spApproxSpace, v.m_spDD, v.m_bManaged);
  enable_redistribution(v.redistribution_enabled());
 
#ifdef UG_PARALLEL
//  copy storage type
  this->set_storage_type(v.get_storage_mask());
  this->set_layouts(v.layouts());
#endif
};
 
 
template <typename TDomain, typename TAlgebra>
void GridFunction<TDomain, TAlgebra>::assign(const vector_type& v)
{
//  check size
  if(v.size() != vector_type::size())
    UG_THROW("GridFunction: Assigned vector has incorrect size.");
 
//  assign vector
  *(dynamic_cast<vector_type*>(this)) = v;
}
 
template <typename TDomain, typename TAlgebra>
void GridFunction<TDomain, TAlgebra>::assign(const this_type& v)
{
//  clone pattern
  clone_pattern(v);
 
//  copy values
  *(dynamic_cast<vector_type*>(this)) = *dynamic_cast<const vector_type*>(&v);
}
void GridFunction<TDomain, TAlgebra>::assign(const this_type& v) {…}
 
template <typename TDomain, typename TAlgebra>
GridFunction<TDomain, TAlgebra>*
GridFunction<TDomain, TAlgebra>::virtual_clone_without_values() const
{
  GridFunction<TDomain, TAlgebra>* p =
    new GridFunction<TDomain, TAlgebra>(m_spApproxSpace, m_spDD, m_bManaged);
  p->enable_redistribution(redistribution_enabled());
  if(p->size() != this->size())
    p->resize(this->size());
#ifdef UG_PARALLEL
  p->set_layouts(this->layouts());
#endif
 
  return p;
}
GridFunction<TDomain, TAlgebra>::virtual_clone_without_values() const {…}
 
// GridFunction : dof distribution callbacks
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::
resize_values(size_t s, number defaultValue)
{
//  remember old values
  const size_t oldSize = vector_type::size();
 
//  resize vector
  vector_type::resize_sloppy(s);
 
//  set vector to zero-values
  for(size_t i = oldSize; i < s; ++i)
    this->operator[](i) = defaultValue;
}
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::
permute_values(const std::vector<size_t>& vIndNew)
{
//  check sizes
  if(vIndNew.size() != this->size())
    UG_THROW("GridFunction::permute_values: For a permutation the"
        " index set must have same cardinality as vector.");
 
// \todo: avoid tmp vector, only copy values into new vector and use that one
//  create tmp vector
  vector_type vecTmp; vecTmp.resize(this->size());
#ifdef UG_PARALLEL
//  copy storage type
  vecTmp.set_storage_type(this->get_storage_mask());
  vecTmp.set_layouts(this->layouts());
#endif
 
//  loop indices and copy values
  for(size_t i = 0; i < vIndNew.size(); ++i)
    vecTmp[vIndNew[i]] = this->operator[](i);
 
//  copy tmp vector into this vector
  this->assign(vecTmp);
}
GridFunction<TDomain, TAlgebra>:: {…}
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::
copy_values(const std::vector<std::pair<size_t, size_t> >& vIndexMap,bool bDisjunct)
{
//  disjunct case
  if(bDisjunct)
    for(size_t i = 0; i < vIndexMap.size(); ++i)
      this->operator[](vIndexMap[i].second)
        = this->operator[](vIndexMap[i].first);
  else {
    typedef typename vector_type::value_type value_type;
    std::vector<value_type> values;
    values.resize(vIndexMap[vIndexMap.size()-1].first);
    for(size_t i = 0; i < vIndexMap.size(); ++i){ 
      const size_t index = vIndexMap[i].first;
      if (index>=values.size()) values.resize(index+1);
      values[index] = this->operator[](index);
    }
    for(size_t i = 0; i < vIndexMap.size(); ++i)
      this->operator[](vIndexMap[i].second)
        = values[vIndexMap[i].first];
  }
}
GridFunction<TDomain, TAlgebra>:: {…}
 
// GridFunction : grid adaption
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::
register_at_adaption_msg_hub()
{
//  register function for grid adaption
  SPMessageHub msgHub = domain()->grid()->message_hub();
  m_spGridAdaptionCallbackID =
    msgHub->register_class_callback(this,
    &this_type::grid_changed_callback);
 
  m_spGridDistributionCallbackID =
    msgHub->register_class_callback(this,
    &this_type::grid_distribution_callback);
}
GridFunction<TDomain, TAlgebra>:: {…}
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::
grid_changed_callback(const GridMessage_Adaption& msg)
{
  // before adaption begins: copy values into grid attachments
  if(msg.adaption_begins()){
    // prepare
    m_spAdaptGridFct = SmartPtr<AdaptionSurfaceGridFunction<TDomain> >(
              new AdaptionSurfaceGridFunction<TDomain>(this->domain()));
    m_spAdaptGridFct->copy_from_surface(*this);
  }
 
  // before coarsening: restrict values
  if(msg.coarsening() && msg.step_begins()){
    #ifdef UG_PARALLEL
    //  since ghosts may exist in a parallel environment and since those ghosts
    //  may be removed during coarsening, we have to make sure, that the correct
    //  values are stored in those ghosts before restriction is performed.
      Grid& grid = *domain()->grid();
      typedef typename AdaptionSurfaceGridFunction<TDomain>::AValues AValues;
      if(m_spDDI->max_dofs(VERTEX)){
        ComPol_CopyAttachment<VertexLayout, AValues> compol(grid, m_spAdaptGridFct->value_attachment());
        pcl::InterfaceCommunicator<VertexLayout> com;
        com.exchange_data(grid.distributed_grid_manager()->grid_layout_map(),
                  INT_V_SLAVE, INT_V_MASTER, compol);
        com.communicate();
      }
      if(m_spDDI->max_dofs(EDGE)){
        ComPol_CopyAttachment<EdgeLayout, AValues> compol(grid, m_spAdaptGridFct->value_attachment());
        pcl::InterfaceCommunicator<EdgeLayout> com;
        com.exchange_data(grid.distributed_grid_manager()->grid_layout_map(),
                  INT_V_SLAVE, INT_V_MASTER, compol);
        com.communicate();
      }
      if(m_spDDI->max_dofs(FACE)){
        ComPol_CopyAttachment<FaceLayout, AValues> compol(grid, m_spAdaptGridFct->value_attachment());
        pcl::InterfaceCommunicator<FaceLayout> com;
        com.exchange_data(grid.distributed_grid_manager()->grid_layout_map(),
                  INT_V_SLAVE, INT_V_MASTER, compol);
        com.communicate();
      }
      if(m_spDDI->max_dofs(VOLUME)){
        ComPol_CopyAttachment<VolumeLayout, AValues> compol(grid, m_spAdaptGridFct->value_attachment());
        pcl::InterfaceCommunicator<VolumeLayout> com;
        com.exchange_data(grid.distributed_grid_manager()->grid_layout_map(),
                  INT_V_SLAVE, INT_V_MASTER, compol);
        com.communicate();
      }
    #endif
    m_spAdaptGridFct->do_restrict(msg);
  }
 
  // after refinement: prolongate values
  if(msg.refinement() && msg.step_ends()){
    m_spAdaptGridFct->prolongate(msg);
  }
 
  // at end of adaption: copy values back into algebra vector
  if(msg.adaption_ends())
  {
    // all grid functions must resize to the current number of dofs
    resize_values(num_indices());
 
    #ifdef UG_PARALLEL
    //  set layouts
    this->set_layouts(m_spDD->layouts());
    #endif
 
 
    m_spAdaptGridFct->copy_to_surface(*this);
    m_spAdaptGridFct = SPNULL;
  }
}
 
template <typename TDomain, typename TAlgebra>
void
GridFunction<TDomain, TAlgebra>::
grid_distribution_callback(const GridMessage_Distribution& msg)
{
  PROFILE_FUNC();
 
  #ifdef UG_PARALLEL
  GridDataSerializationHandler& sh = msg.serialization_handler();
 
  switch(msg.msg()){
    case GMDT_DISTRIBUTION_STARTS:{
      if(redistribution_enabled()){
        m_preDistStorageType = this->get_storage_mask();
        if(!(this->has_storage_type(PST_CONSISTENT) || this->has_storage_type(PST_UNDEFINED))){
          this->change_storage_type(PST_CONSISTENT);
        }
 
        m_spAdaptGridFct = SmartPtr<AdaptionSurfaceGridFunction<TDomain> >(
              new AdaptionSurfaceGridFunction<TDomain>(this->domain(), false));
        m_spAdaptGridFct->copy_from_surface(*this);
        Grid& grid = *domain()->grid();
 
        typedef typename AdaptionSurfaceGridFunction<TDomain>::AValues AValues;
 
        if(m_spDDI->max_dofs(VERTEX)){
          ComPol_CopyAttachment<VertexLayout, AValues> compol(grid, m_spAdaptGridFct->value_attachment());
          pcl::InterfaceCommunicator<VertexLayout> com;
          com.exchange_data(grid.distributed_grid_manager()->grid_layout_map(),
                    INT_V_SLAVE, INT_V_MASTER, compol);
          com.communicate();
          sh.add(GeomObjAttachmentSerializer<Vertex, AValues>::
                create(grid, m_spAdaptGridFct->value_attachment()));
        }
        if(m_spDDI->max_dofs(EDGE)){
          ComPol_CopyAttachment<EdgeLayout, AValues> compol(grid, m_spAdaptGridFct->value_attachment());
          pcl::InterfaceCommunicator<EdgeLayout> com;
          com.exchange_data(grid.distributed_grid_manager()->grid_layout_map(),
                    INT_V_SLAVE, INT_V_MASTER, compol);
          com.communicate();
          sh.add(GeomObjAttachmentSerializer<Edge, AValues>::
                create(grid, m_spAdaptGridFct->value_attachment()));
        }
        if(m_spDDI->max_dofs(FACE)){
          ComPol_CopyAttachment<FaceLayout, AValues> compol(grid, m_spAdaptGridFct->value_attachment());
          pcl::InterfaceCommunicator<FaceLayout> com;
          com.exchange_data(grid.distributed_grid_manager()->grid_layout_map(),
                    INT_V_SLAVE, INT_V_MASTER, compol);
          com.communicate();
          sh.add(GeomObjAttachmentSerializer<Face, AValues>::
                create(grid, m_spAdaptGridFct->value_attachment()));
        }
        if(m_spDDI->max_dofs(VOLUME)){
          ComPol_CopyAttachment<VolumeLayout, AValues> compol(grid, m_spAdaptGridFct->value_attachment());
          pcl::InterfaceCommunicator<VolumeLayout> com;
          com.exchange_data(grid.distributed_grid_manager()->grid_layout_map(),
                    INT_V_SLAVE, INT_V_MASTER, compol);
          sh.add(GeomObjAttachmentSerializer<Volume, AValues>::
                create(grid, m_spAdaptGridFct->value_attachment()));
        }
      }
    }break;
 
    case GMDT_DISTRIBUTION_STOPS:
      {
        PROFILE_BEGIN(grid_func_distribution_stops)
        // all grid functions must resize to the current number of dofs
        resize_values(num_indices());
 
        //  set layouts
        this->set_layouts(m_spDD->layouts());
 
        if(redistribution_enabled()){
          m_spAdaptGridFct->copy_to_surface(*this);
          m_spAdaptGridFct = SPNULL;
 
          if(m_preDistStorageType != this->get_storage_mask()){
            if((m_preDistStorageType & PST_ADDITIVE) == PST_ADDITIVE)
              this->change_storage_type(PST_ADDITIVE);
            else if((m_preDistStorageType & PST_UNIQUE) == PST_UNIQUE)
              this->change_storage_type(PST_UNIQUE);
            else{
              UG_THROW("Can't reestablish storage type!");
            }
          }
        }
 
        PROFILE_END();
      }break;
 
    default:
      break;
  }
  #endif
}
          this->change_storage_type(PST_CONSISTENT); {…}
 
} // end namespace ug
 
#endif /* __H__UG__LIB_DISC__FUNCTION_SPACE__GRID_FUNCTION_IMPL__ */
      if(redistribution_enabled()) {…}
  #ifdef UG_PARALLEL {…}
GridFunction<TDomain, TAlgebra>:: {…}
  } {…}
  {…}
    this->set_layouts(m_spDD->layouts()); {…}
GridFunction<TDomain, TAlgebra>:: {…}
template <typename TDomain, typename TAlgebra> {…}
 {…}
GridFunction<TDomain, TAlgebra>:: {…}
void {…}
  {…}
//  assign vector {…}
//  check size {…}
void GridFunction<TDomain, TAlgebra>::assign(const vector_type& v) {…}
template <typename TDomain, typename TAlgebra> {…}
}; {…}
//  copy storage type {…}
  init(v.m_spApproxSpace, v.m_spDD, v.m_bManaged); {…}
GridFunction<TDomain, TAlgebra>:: {…}