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A list of basic BASH commands and Linux Command Line for newbies.
When you're running on your "home" system, you can run any editor you like, most of the time Eclipse can do everything, especially with the appropriate plugins. Other recommended editors are gedit or any of the Remote Editors for Linux, notepad++ for Windows, Aquamacs Emacs for Mac or Komodo Edit for all Platforms.
When you want to access remote systems like clusters, you can't get around learning a editor which is running in text mode on your shell or via X11. Most popular editors are
They are installed on almost all linux systems. What kind of editor you need depends on taste and task you want to accomplish.
If you spend a lot of time in the shell, you should really learn about programming the BASH: