volume_util_impl.hpp

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/*
 * Copyright (c) 2010-2015:  G-CSC, Goethe University Frankfurt
 * Author: Sebastian Reiter
 * 
 * This file is part of UG4.
 * 
 * UG4 is free software: you can redistribute it and/or modify it under the
 * terms of the GNU Lesser General Public License version 3 (as published by the
 * Free Software Foundation) with the following additional attribution
 * requirements (according to LGPL/GPL v3 §7):
 * 
 * (1) The following notice must be displayed in the Appropriate Legal Notices
 * of covered and combined works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (2) The following notice must be displayed at a prominent place in the
 * terminal output of covered works: "Based on UG4 (www.ug4.org/license)".
 * 
 * (3) The following bibliography is recommended for citation and must be
 * preserved in all covered files:
 * "Reiter, S., Vogel, A., Heppner, I., Rupp, M., and Wittum, G. A massively
 *   parallel geometric multigrid solver on hierarchically distributed grids.
 *   Computing and visualization in science 16, 4 (2013), 151-164"
 * "Vogel, A., Reiter, S., Rupp, M., Nägel, A., and Wittum, G. UG4 -- a novel
 *   flexible software system for simulating pde based models on high performance
 *   computers. Computing and visualization in science 16, 4 (2013), 165-179"
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Lesser General Public License for more details.
 */
 
#ifndef __H__LIB_GRID__VOLUME_UTIL_IMPL__
#define __H__LIB_GRID__VOLUME_UTIL_IMPL__
 
#include <algorithm>
#include <vector>
#include "lib_grid/lg_base.h"
#include "common/static_assert.h"
#include "common/util/vec_for_each.h"
#include "lib_grid/grid_objects/hexahedron_rules.h"
#include "lib_grid/grid_objects/prism_rules.h"
#include "lib_grid/grid_objects/pyramid_rules.h"
 
namespace ug
{
template <class TAAPos>
bool
ContainsPoint(Volume* vol, const vector3& p, TAAPos aaPos)
{
//  iterate over face descriptors of the sides and check whether the point
//  lies inside or outside
  FaceDescriptor fd;
  vector3 n, dir;
 
//  to minimize rounding errors we'll compare against a small-constant which is
//  relative to the first edge of the examined volume.
  EdgeDescriptor ed;
  vol->edge_desc(0, ed);
  number len = EdgeLength(&ed, aaPos);
 
  // the constant should be relative to the same geometric measure as what it is
  // compared against later on, i.e. length*area, since otherwise problems arise
  // with geometries scaled to very small extensions;
  // which is why I changed sqrt(lenSq) to lenSq^1.5 (mbreit, 2015-05-11)
  const number locSmall = len * len * len * SMALL;
 
  for(size_t i = 0; i < vol->num_faces(); ++i){
    vol->face_desc(i, fd);
    CalculateNormalNoNormalize(n, &fd, aaPos);
    VecSubtract(dir, aaPos[fd.vertex(0)], p);
 
    if(VecDot(dir, n) < -locSmall)
      return false;
  }
  return true;
}
ContainsPoint(Volume* vol, const vector3& p, TAAPos aaPos) {…}
 
//  PointIsInsideTetrahedron
inline bool
PointIsInsideTetrahedron(const vector3& v, Tetrahedron* tet,
             Grid::VertexAttachmentAccessor<APosition>& aaPos)
{
  return PointIsInsideTetrahedron(v, aaPos[tet->vertex(0)], aaPos[tet->vertex(1)],
                  aaPos[tet->vertex(2)], aaPos[tet->vertex(3)]);
}
PointIsInsideTetrahedron(const vector3& v, Tetrahedron* tet, {…}
 
//  CalculateCenter
template<class TVertexPositionAttachmentAccessor>
typename TVertexPositionAttachmentAccessor::ValueType
CalculateCenter(const VolumeVertices* vol, TVertexPositionAttachmentAccessor& aaPosVRT)
{
  typename TVertexPositionAttachmentAccessor::ValueType v;
//  init v with 0.
  VecSet(v, 0);
 
  size_t numVrts = vol->num_vertices();
  VolumeVertices::ConstVertexArray vrts = vol->vertices();
 
//  sum up
  for(size_t i = 0; i < numVrts; ++i)
  {
    VecAdd(v, v, aaPosVRT[vrts[i]]);
  }
 
//  average
  if(numVrts > 0)
    VecScale(v, v, 1./(number)numVrts);
 
  return v;
}
CalculateCenter(const VolumeVertices* vol, TVertexPositionAttachmentAccessor& aaPosVRT) {…}
 
template<class TAAPosVRT, class TAAWeightVRT>
UG_API
typename TAAPosVRT::ValueType
CalculateCenter(const VolumeVertices* vol, TAAPosVRT& aaPos, TAAWeightVRT& aaWeight)
{
  typename TAAPosVRT::ValueType v;
  typedef typename TAAWeightVRT::ValueType weight_t;
 
//  init v with 0.
  VecSet(v, 0);
 
  size_t numVrts = vol->num_vertices();
  VolumeVertices::ConstVertexArray vrts = vol->vertices();
 
//  sum up
  weight_t totalWeight = 0;
  for(size_t i = 0; i < numVrts; ++i)
  {
    weight_t w = aaWeight[vrts[i]];
    VecScaleAppend(v, w, aaPos[vrts[i]]);
    totalWeight += w;
  }
 
//  average
  if(totalWeight != 0)
    VecScale(v, v, 1./(number)totalWeight);
 
  return v;
}
CalculateCenter(const VolumeVertices* vol, TAAPosVRT& aaPos, TAAWeightVRT& aaWeight) {…}
 
 
template <class TElem>
class CmpVrtsByHash{
  public:
    CmpVrtsByHash(TElem* e) : m_e(e) {};
    bool operator () (int i0, int i1) {
      return m_e->vertex(i0)->get_hash_value() < m_e->vertex(i1)->get_hash_value();
    }
    bool operator () (int i0, int i1) {…}
  private:
    TElem* m_e;
};
class CmpVrtsByHash {…};
 
 
template <class TVolIter>
void ConvertToTetrahedra (
    Grid& grid,
    TVolIter volsBegin,
    TVolIter volsEnd)
{
  using namespace std;
 
//  first we'll collect all quadrilaterals that are connected to selected
//  volumes. Avoid 'grid.mark' here, since it may be used by 'grid.associated_elements'
  Grid::face_traits::secure_container faces;
  vector<Face*> quads;
 
  for(TVolIter iv = volsBegin; iv != volsEnd; ++iv){
    grid.associated_elements(faces, *iv);
    for_each_in_vec(Face* f, faces){
      if(f->num_vertices() == 4)
        quads.push_back(f);
    }end_for;
  }
 
//  remove double entries
  grid.begin_marking();
  size_t offset = 0;
 
  for(size_t i = 0; i + offset < quads.size();){
    if(offset > 0)
      quads[i] = quads[i + offset];
    
    if(!grid.is_marked(quads[i])){
      grid.mark(quads[i]);
      ++i;
    }
    else{
      ++offset;
    }
  }
 
  if(offset > 0)
    quads.resize(quads.size() - offset);
 
  grid.end_marking();
 
  for_each_in_vec(Face* f, quads){
//todo  in a parallel environment, global id's should be compared here
    CmpVrtsByHash<Face> cmp(f);
  //  get the smallest vertex of the face
    int smallest = 0;
    for(int i = 1; i < 4; ++i){
      if(cmp(i, smallest))
        smallest = i;
    }
 
    int i0 = smallest;
    int i1 = (smallest + 1) % 4;
    int i2 = (smallest + 2) % 4;
    int i3 = (smallest + 3) % 4;
    grid.create<Triangle>(TriangleDescriptor(f->vertex(i0), f->vertex(i1), f->vertex(i2)), f);
    grid.create<Triangle>(TriangleDescriptor(f->vertex(i2), f->vertex(i3), f->vertex(i0)), f);
  }end_for;
 
 
//  now convert the given volume-elements
  UG_STATIC_ASSERT((prism_rules::MAX_NUM_CONVERT_TO_TETS_INDS_OUT < 
              hex_rules::MAX_NUM_CONVERT_TO_TETS_INDS_OUT) &&
            (pyra_rules::MAX_NUM_CONVERT_TO_TETS_INDS_OUT <
              hex_rules::MAX_NUM_CONVERT_TO_TETS_INDS_OUT),
           HEX_RULES_MAX_NUM_CONVERT_TO_TETS_INDS_OUT__considered_to_be_highest_among_prism_pyra_and_hex);
  static const int arrayLen = hex_rules::MAX_NUM_CONVERT_TO_TETS_INDS_OUT;
  int inds[arrayLen];
  
  vector<Volume*> volsToErase;
  for(TVolIter iv = volsBegin; iv != volsEnd; ++iv){
    Volume* vol = *iv;
    const ReferenceObjectID roid = vol->reference_object_id();
    CmpVrtsByHash<Volume> cmp(vol);
    size_t numEntries = 0;
 
    switch(roid){
      case ROID_PYRAMID:
        numEntries = pyra_rules::ConvertToTetrahedra(inds, cmp);
        break;
 
      case ROID_PRISM:
        numEntries = prism_rules::ConvertToTetrahedra(inds, cmp);
        break;
 
      case ROID_HEXAHEDRON:
        UG_THROW("ConvertToTetrahedra for hexahedra not yet implemented!");
        break;
      default:
        break;
    }
 
    if(numEntries > 0){
      volsToErase.push_back(vol);
      size_t i = 0;
      Volume::ConstVertexArray vrts = vol->vertices();
      while(i < numEntries){
        int goid = inds[i++];
        UG_COND_THROW(goid != GOID_TETRAHEDRON,
                "Only tetrahedra may result from ConvertToTetrahedra");
        int i0 = inds[i++];
        int i1 = inds[i++];
        int i2 = inds[i++];
        int i3 = inds[i++];
        grid.create<Tetrahedron>(
          TetrahedronDescriptor(vrts[i0], vrts[i1], vrts[i2], vrts[i3]),
          vol);
      }
    }
  }
 
//  finally erase all unused volumes and quadrilaterals
  for_each_in_vec(Volume* v, volsToErase){
    grid.erase(v);
  }end_for;
 
  Grid::volume_traits::secure_container assVols;
  for_each_in_vec(Face* f, quads){
    grid.associated_elements(assVols, f);
    if(assVols.empty())
      grid.erase(f);
  }end_for;
}
void ConvertToTetrahedra ( {…}
 
}// end of namespace
 
#endif